Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03966 ATGGCTTCGCGCGTCGGCATCACTAATACCTCTTCTCCTACTTATTTAAACTCTTCACGTTTTCTATCTCCTTCCAAATTTTCCAATTCCTCTTTCCAACCCCAAAACGCTGCCTCCGCTTCCAATATGTTCAACAAATCGGTTCTTGTTACCGGTGGAGCCGGTTACATCGGTAGCCACACCGTTCTTCAACTTCTTCTCGGCGGTTTTAAAACCGTCGTTGTTGATAATCTTGATAATTCCTCTGAAGTTGCAATCCGTAGAGTCAAGGAACTCGCTGCTGAATTTGGGAATAATCTCAACTTTCACAAGGTGGATCTCCGGGACAGGGCTGCACTGGAGAAAATTTTCGCTTCCACAAAGTTTGATGCAGTCATACATTTTGCTGGATTGAAAGCAGTAGGTGAAAGTGTGCAGAAACCGTTACTCTACTACAACAACAACTTGATTGGGACAATCACTCTGTTGGAAGTCATGGCTGCTCATGGATGCAAGAAGCTTGTGTTCTCATCTTCAGCCACTGTATATGGTTGGCCAAAGGAGGTTCCATGTACTGAAGAGTTTCCTCTGTCAGCAGCGAATCCATATGGACGAACCAAGCTTACCATTGAAGAAATCTGTCGTGATGTCCACCGTGCTGAACCAGATTGGAAAATAATATTATTAAGATACTTCAACCCTGTGGGTGCACACCCTAGTGGTTATATTGGGGAGGATCCTCGTGGAACTCCAAACAACCTCATGCCATTTATTCAGCAAGTAGCGGTTGGGAGACGGCCTGCACTGACAGTGTTTGGAAATGATTATAATACAGTTGATGGAACTGGGGTTCGGGATTACATTCATGTTGTTGATTTAGCAGATGGACACATTGCTGCATTGCTTAAACTTGAAGCTGATATAGGTTGTGAGGTTTATAACTTGGGTACTGGAAAGGGAACATCAGTTTTGGAGATGGTTAGAGCTTTTGAACAGGCATCTGGAAAGAAAATTCCACTTGTGAAAGCTGACCGTAGACCTGGTGATGCTGAAATTGTTTATGCATCTACAGAAAAAGCTGAACGAGAACTTAAGTGGAAGGCAAAATATGGAATTGATGAAATGTGCCGTGATCAGTGGAATTGGGCTAGCAAAAACCCTTATGGCTATGGATCTCCAGATTCCACGGATTAA 1173 0.4348 MASRVGITNTSSPTYLNSSRFLSPSKFSNSSFQPQNAASASNMFNKSVLVTGGAGYIGSHTVLQLLLGGFKTVVVDNLDNSSEVAIRRVKELAAEFGNNLNFHKVDLRDRAALEKIFASTKFDAVIHFAGLKAVGESVQKPLLYYNNNLIGTITLLEVMAAHGCKKLVFSSSATVYGWPKEVPCTEEFPLSAANPYGRTKLTIEEICRDVHRAEPDWKIILLRYFNPVGAHPSGYIGEDPRGTPNNLMPFIQQVAVGRRPALTVFGNDYNTVDGTGVRDYIHVVDLADGHIAALLKLEADIGCEVYNLGTGKGTSVLEMVRAFEQASGKKIPLVKADRRPGDAEIVYASTEKAERELKWKAKYGIDEMCRDQWNWASKNPYGYGSPDSTD 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03966 390 NCBIfam UDP-glucose 4-epimerase GalE 48 381 IPR005886 GO:0003978|GO:0006012
Vivi2g03966 390 CDD UDP_G4E_1_SDR_e 48 375 IPR005886 GO:0003978|GO:0006012
Vivi2g03966 390 PRINTS Nucleotide sugar epimerase signature 342 359 - -
Vivi2g03966 390 PRINTS Nucleotide sugar epimerase signature 74 90 - -
Vivi2g03966 390 PRINTS Nucleotide sugar epimerase signature 303 318 - -
Vivi2g03966 390 PRINTS Nucleotide sugar epimerase signature 278 293 - -
Vivi2g03966 390 PANTHER UDP-GLUCOSE 4-EPIMERASE 45 384 - -
Vivi2g03966 390 Pfam GDP-mannose 4,6 dehydratase 49 371 IPR016040 -
Vivi2g03966 390 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 43 382 IPR036291 -
Vivi2g03966 390 FunFam UDP-glucose 4-epimerase 48 242 - -
Vivi2g03966 390 FunFam UDP-glucose 4-epimerase 4 319 386 - -
Vivi2g03966 390 Gene3D - 48 316 - -
Vivi2g03966 390 Gene3D - 236 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03966 Vivi-Chr2 152351583 152355193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03966 47 360 Miscellaneous Gene Families AT4G00110 28.571 6.30e-24 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03966 K01784 - gmx:100818509 667.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g03966 2 152351583 152355193 Vivi2g03966 2 152351583 152355193 ECH
Vivi2g03966 2 152351583 152355193 Vivi5g06064 5 165702855 165707387 PCT