Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03955 ATGGCGCAGAACAGATTCGTCATTGAAGTCGAAAAAGCAAAGGAAGCGAGTGATGGTAGACCTTCTAGAGGACCTGCGTACCGTAGCATCTTCGCGAAGGATGGATTTCCTGCTCCTATTCCAGGTCTTGATAGTTGCTGGGACGTTTTCCGGATTTCTGTTGAGAAATATCCGAATAATCCTATGCTTGGTAACAGAGAGATTGTGGATGGGAAGGCTGGCGGTTACAAGTGGCAAACTTACAAAGAAGTATATGATTTGGTGATCAAAGTCGGAAATTCCATCCGTAGCTGTGGTTATGGAGAAGGTGTAAAATGTGGTATATATGGTGCCAATTCTGCCGAGTGGATTATGAGCATGGAGGCTTGCAATGCTCATGGACTTCTTTGTGTTCCTTTATATGATACCTTAGGTTCTGGAGCCATAGAATTTATTATATCCCATGCAGAAGTCTCAATTGCATTTGCAGAAGAAAAGAAAATACCCGAGCTGTTGAAGACATTTCCAAATGCAACCAAATATCTCAGAACAATTGTGAGCTTCGGAAAGGTTACCCCTGAACAAAAGCAAGAAGTTGAGAAGTTTGGATTGGCAATATATTCATGGACCGAATTTTTAAAATTGGGTGAAAGTCAGAGTTTTGATCTACCTGTAAAAAAAAGAAGCGACATCTCTACTATAATGTATACTAGCGGAACTACTGGTGATCCCAAGGGAGTATTGATATCCAATGAGAGTATTATTACCCTATTAGCTGGGGTTAAGCGGCTGTTGGAGAGTGTTGATGAAAAATTGACTGAGAAGGATGTGTACTTATCATACCTTCCTCTCGCACATATCTTTGATAGGGTCATTGAAGAGACATTTATATGGCATGGTGCCTCGATAGGCTTCTGGCGTGGGGATGTTAAATTGTTAATTGAGGACCTCGGAGAGCTAAAACCAACTATTTTCTGTGCTGTACCCCGTGTACTTGATAGAGTGTACTCAGGTTTGACACAGAAAATTTCTTCTGGAGGCTTCCTGAAGAAGACATTATTCAACTTTGCTTATTCATTCAAGATGAATAACATGAAGAAAGGGCATAAGCATACAGCAGCATCTCCACTTCTTGACAAAATTGTGTTTGATAAGGTAAAGCAAGGTTTAGGGGGTAAAGTACGTGTCATTTTGTCTGGAGCAGCACCTCTATCTGTGCACGTGGAAAGTTACTTACGGGTGGTGACCTGTGCTCATGTCCTTCAAGGATATGGTCTGACCGAAACCTGTGCGGGAACCTTTGTCTCATTACCAAATGAACTAGATATGCTTGGAACAGTGGGTCCTCCTGTACCAAATGTAGATGCTTGCCTTGAATCTGTCCCTGAAATGGGTTACGATGCCCTTGCAAGCACACCAAGAGGAGAAATTTGTGTAAAGGGTGATCCCTTGTTTTCGGGGTACTACAAACGGGAAGACCTCACAAAAGAGGTTCTGATTGATGGATGGTTCCATACAGGGGACATTGGAGAGTGGCAGCCTAATGGAAGCATGAAGATTATTGATAGGAAGAAGAATATATTCAAGCTTTCACAGGGAGAATATGTCGCAGTTGAAAACCTGGAGAATATTTTTAGCCAAGTTCCTTCTATTGAATCTATATGGGTTTACGGAAACAGTTTTGAGGCCTTCCTTGTTGCTGTTGTTAACCCTAGTAAGCAGGCACTTGAACATTGGGCAGAAGAAAATGGTATATCAATGGACTTTGATTCTCTCTGTGAAGATTCTAGGGCCAAAAGTTACATACTTGAAGAGCTCTCGAAGCTTGGAAAGGAAAAGAAGTTGAAAGGATTTGAGTTTATAAAAGCAGTTCATCTTGATCCAGTTCCATTTGATATGGAACGTGACCTTATCACTCCAACATTTAAGAAGAAGAGGCCTCAGTTGCTTAAATACTATCAGAATGTGATCGATAACTTGTACAAAAGTGGAAATAAACCCCGTACCTGA 1989 0.4138 MAQNRFVIEVEKAKEASDGRPSRGPAYRSIFAKDGFPAPIPGLDSCWDVFRISVEKYPNNPMLGNREIVDGKAGGYKWQTYKEVYDLVIKVGNSIRSCGYGEGVKCGIYGANSAEWIMSMEACNAHGLLCVPLYDTLGSGAIEFIISHAEVSIAFAEEKKIPELLKTFPNATKYLRTIVSFGKVTPEQKQEVEKFGLAIYSWTEFLKLGESQSFDLPVKKRSDISTIMYTSGTTGDPKGVLISNESIITLLAGVKRLLESVDEKLTEKDVYLSYLPLAHIFDRVIEETFIWHGASIGFWRGDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLTQKISSGGFLKKTLFNFAYSFKMNNMKKGHKHTAASPLLDKIVFDKVKQGLGGKVRVILSGAAPLSVHVESYLRVVTCAHVLQGYGLTETCAGTFVSLPNELDMLGTVGPPVPNVDACLESVPEMGYDALASTPRGEICVKGDPLFSGYYKREDLTKEVLIDGWFHTGDIGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENLENIFSQVPSIESIWVYGNSFEAFLVAVVNPSKQALEHWAEENGISMDFDSLCEDSRAKSYILEELSKLGKEKKLKGFEFIKAVHLDPVPFDMERDLITPTFKKKRPQLLKYYQNVIDNLYKSGNKPRT 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03955 662 Gene3D - 43 516 IPR042099 -
Vivi2g03955 662 CDD LC-FACS_euk 74 655 IPR045311 GO:0004467|GO:0006631
Vivi2g03955 662 ProSitePatterns Putative AMP-binding domain signature. 227 238 IPR020845 -
Vivi2g03955 662 Pfam AMP-binding enzyme 52 524 IPR000873 -
Vivi2g03955 662 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 19 654 - -
Vivi2g03955 662 SUPERFAMILY Acetyl-CoA synthetase-like 43 655 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03955 Vivi-Chr2 152076903 152085484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03955 3 658 Acyl Lipid Metabolism Gene Families AT4G23850 75.762 0.0 1068
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03955 K01897 - gmx:100814965 1211.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g03955 2 152076903 152085484 Vivi2g03955 2 152076903 152085484 ECH
Vivi2g03955 2 152076903 152085484 Vivi5g06050 5 165533870 165541437 PCT