Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02804 ATGGCGACGCGAAAATCCGCACCGCACTTTCTCAAACAACTCTACGCCTCTCGCCACCACCTCAACCCAACCCGCTCCGTCACCTACATGCCCCGACCCGGAGACGGCACACCTCGCGGCGTAACGCTCATCCCCGGCGACGGAATCGGACCACTAGTAACCGGCGCGGTGGAGCAAGTAATGGAGGCCATGCATGCACCGGTGTACTTCGAGAAGTTTGAAGTGCACGGTGACATGAAAGCGGTGCCAGGTGAGGTGTTGGAGTCGATTAGGAAGAATAAGGTTTGTTTGAAAGGGGGACTGGAGACTCCTATGGGTGGGGGAGTTAGTTCGCTTAATGTGCAGTTGAGGAAGGAGCTTGATCTTTATGCTTCGCTTGTTAACTGTTTTAATCTTCCGGGGTTAACTACGCGGCATGATAATGTTGATATTGTTGTTATTAGGGAGAATACAGAGGGGGAATATGCTGGACTTGAACATGAGGTTGTTCCTGGTGTTGTTGAGAGCCTCAAGGTTATAACAAAGTTCTGTTCAGAGCGCATTGCTAAATATGCTTTCGAGTATGCTTATCTAAATAACCGAAAGAAGGTGACTGCTGTGCACAAAGCAAACATTATGAAACTCGCAGATGGTTTATTCTTGGAATCTTGTAGAGAGATTGCCACAAAGTATCCTGGAATCAAGTATAATGAAATTATTGTAGATAACTGTTGCATGCAGCTTGTTTCAAAGCCTGAGCAGTTTGATGTCATGGTAACCCCCAATCTTTATGGAAATCTTGTTGCAAATACAGCGGCTGGCATTGCTGGTGGAACTGGTGTCATGCCGGGAGGAAATGTTGGTGCTGACCATGCTGTATTTGAACAAGGTGCTTCAGCAGGTAATGTGGGTAAAGAAAAAGTAGTACGACAAAAGAAAGCCAACCCTGTGGCACTCCTCCTTTCATCGGCAATGATGCTTAGACATCTCCGGTTTCCTGCATTTGCTGACCGATTGGAAACTGCTGTGAAGCGAGTCATTTTAGAGGGCAAACACCGGACCAAGGACCTTGGAGGAACAAGCACCACCCAAGAGGTTGTTGATGCAGTGATAGATGCATTAAATTAA 1107 0.4724 MATRKSAPHFLKQLYASRHHLNPTRSVTYMPRPGDGTPRGVTLIPGDGIGPLVTGAVEQVMEAMHAPVYFEKFEVHGDMKAVPGEVLESIRKNKVCLKGGLETPMGGGVSSLNVQLRKELDLYASLVNCFNLPGLTTRHDNVDIVVIRENTEGEYAGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREIATKYPGIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGKEKVVRQKKANPVALLLSSAMMLRHLRFPAFADRLETAVKRVILEGKHRTKDLGGTSTTQEVVDAVIDALN 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02804 368 Gene3D Isopropylmalate Dehydrogenase 29 367 - -
Vivi2g02804 368 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 32 367 - -
Vivi2g02804 368 SMART Iso_dh_2 40 363 IPR024084 -
Vivi2g02804 368 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 40 367 - -
Vivi2g02804 368 Pfam Isocitrate/isopropylmalate dehydrogenase 41 363 IPR024084 -
Vivi2g02804 368 NCBIfam isocitrate dehydrogenase (NAD(+)) 37 366 IPR004434 GO:0006099
Vivi2g02804 368 FunFam Isocitrate dehydrogenase [NAD] regulatory subunit 1 28 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02804 Vivi-Chr2 124065932 124071830 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02804 K00030 - gmx:100778831 659.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g02804 2 124065932 124071830 Vivi2g02804 2 124065932 124071830 ECH
Vivi2g02804 2 124065932 124071830 Vivi1g03214 1 69957731 69962790 PCT