Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03214 ATGTCACAAATGGCAAGAAGATCCACACAACTCCTCAAACACCTCATATCTCCCCGATCGGAGTCGTCCCTCGGTTCCAAGCGATGGGTAACCTATATGCATCGTCCCGGCGACGGAACACCGCGTCCCGTAACAATGATCCCCGGGGACGGGATCGGACCTCTTGTAACCGGAGCGGTTGAACAGGTGATGGAAGCGATGCACGCGCCTGTTTATTTCGAGAAATTCGATGTGCACGGCGATATGAAAGCTGTTCCCACGGAGGTTCTTGAATCGATCCGGAAGAATAAGGTTTGTCTGAAAGGTGGATTGGTGACTCCTATGGGTGGTGGTGTTAGTTCGCTTAATGTTCAGCTTAGGAAGGAGCTTGATCTGTATGCGTCGCTTGTTAATTGTTTTAATCTTCCGGGATTGCCTACGAGACATGATAATGTTGATATTGTAGTCATTAGGGAGAATACTGAAGGGGAGTATGCTGGTCTTGAACATGAGGTTGTCCCGGGTGTCGTCGAAAGCCTGAAGAAGGAAGCTCATCAAGGAGAAGACATTTCTCTCTCTTCCCAAACCTCTCAGGTGATTACAAAGTTCTGTTCTGAGCGTATTGCAAAATATGCATTCGAGTATGCTTACCTCAATAACAGAAAGAAAGTGACTGCTGTCCACAAAGCAAATATAATGAAGCTTGCAGATGGTTTGTTCTTGGAATCCTGTCGAGAGGTTGCCACCAAGTATCCTGGAATTAAGTATAACGAAATTATTGTGGACAATTGCTGCATGCAGCTTGTTTCGAAGCCTGAGCAATTTGATGTCATGGTTACCCCAAATCTGTATGGAAATCTTGTTGCAAATACTGCCGCAGGTATTGCTGGAGGCACTGGAGTCATGCCAGGAGGTAATGTTGGGGCTGAGCACGCAGTGTTTGAACAGGGTGCTTCAGCAGGAAATGTTGGTAACGATAAAATAGCGGCCCAAAAAACAGCCAACCCAGTGGCACTTCTTCTCTCATCAGCTATGATGCTTAGGCATCTCCAGTTTCCTGCATTTGCTGACCGTTTGGAAACTGCTGTTGAAAAAGTCATTCTAGAGGGCAAGTATCGGACAAAAGATCTCGGAGGTAAAAGCACCACCCAAGAAGTTGTCGATGCAGTAATAGACGCCTTAGATTGA 1167 0.4653 MSQMARRSTQLLKHLISPRSESSLGSKRWVTYMHRPGDGTPRPVTMIPGDGIGPLVTGAVEQVMEAMHAPVYFEKFDVHGDMKAVPTEVLESIRKNKVCLKGGLVTPMGGGVSSLNVQLRKELDLYASLVNCFNLPGLPTRHDNVDIVVIRENTEGEYAGLEHEVVPGVVESLKKEAHQGEDISLSSQTSQVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVATKYPGIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGAEHAVFEQGASAGNVGNDKIAAQKTANPVALLLSSAMMLRHLQFPAFADRLETAVEKVILEGKYRTKDLGGKSTTQEVVDAVIDALD 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03214 388 Pfam Isocitrate/isopropylmalate dehydrogenase 44 383 IPR024084 -
Vivi1g03214 388 NCBIfam isocitrate dehydrogenase (NAD(+)) 40 386 IPR004434 GO:0006099
Vivi1g03214 388 SMART Iso_dh_2 43 383 IPR024084 -
Vivi1g03214 388 Gene3D Isopropylmalate Dehydrogenase 30 387 - -
Vivi1g03214 388 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 41 387 - -
Vivi1g03214 388 FunFam Isocitrate dehydrogenase [NAD] regulatory subunit 1 31 387 - -
Vivi1g03214 388 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 28 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03214 Vivi-Chr1 69957731 69962790 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03214 K00030 - gmx:100777867 649.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03214 1 69957731 69962790 Vivi1g03214 1 69957731 69962790 ECH
Vivi2g02804 2 124065932 124071830 Vivi1g03214 1 69957731 69962790 PCT