Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02721 ATGGATGTTCACCAGCAAAGCCTCGAATTTTCAGCCAAAACGAAAAACCAAAAGCATGATTCACAATCACAAACTTCACTCTACTTAGCAAACGCGGTTTTCTTTGGCCTCTTCTTCTCTTTCGCGTACTTTCTTCTTCACAGATGGCGTGAGAAGATTCGAACTTCTACTCCTCTACATGTACTCACAATCTCCGAGATGGTAGCTGTAGTTTCCCTCATCGCTTCATTTTTCTATCTCATGGCTTTCTTCAGCATTGCCTTCATTCTTCATCCCTTCGCCGCTTCCACTGCCGTTCAGTACGATGAAGAAGAAGATGAAGTAGAGATTGCTAAAACCACTGGTTCATGTCTCGCCGGAGTTGCACCGGAGTTACCTCCGCTACCACCAAAAACCACCGTAAAAAAAGTTGCACCAGAACCGGTTATGTCGCAGCTTTCGTCCGATGACGAGGAGGTTGTCCAGGCCGTGGTTTCAGGATCTATTCCGTCTTACTCACTTGAATCAAAACTTGGAGATTGCCGGCGTGCAGCGGCGATTCGTAACCAAGCGGTGGAGAGAGTTACCGGAAGGTCACTTGAAGGTTTGCCGATGGAAAATTTTGATTACGATTCTATATTAGGACAGTGTTGTGAGATGCCGATAGGATTTATTCAGATTCCGGTAGGAGTTGCCGGTCCTCTGTTGCTTGACGGGAAAGAGTTCACGGTTCCGATGGCAACAACCGAGGGTTGTTTAGTTGCAAGCACTAACAGAGGATGTAAAGCTATTTATGTTTCGGGTGGTGCTTCCGCGGTTGTCCTCCGTGATGGCATCACTAGAGCCCCCGTCGTTAGATTCAACTCCGCCAAAAGAGCTTCTCAGTTAAAGTTCTTTTTAGAAGATCCTCAAAATTTTGATTCTCTGGCTCACACTTTCAACAAGTCAAGTAGGTTTGCAAGATTACAGAATATAAAAGCTACTATAGCAGGAAAGAATTTATACACACGGTTTACTTGTTCAACTGGTGATGCAATGGGGATGAACATGGTATCAAAAGGTGTACAAAACGTACTTGATTTTCTTCAAAGTGATTTTCCAGATATGGATGTGATTGGTATATCTGGAAATTTTTGCTCAGACAAGAAAGCGGCTGCAGTGAATTGGATTGAAGGGAGAGGAAAATCTGTGGTGTGTGAGGCTGTAATTAAGGAAGAGGTGGTGAAGAAAGTGTTGAAGACTAGTGTTGAGTCTTTGGTTGAGCTTAACATGCTAAAGAATCTTACTGGTTCAGCCATGGCTGGTGCTCTTGGTGGCTTCAATGCACATGCTAGTAATATTGTTTCAGCTATTTACTTGGCAACAGGTCAAGATCCAGCTCAGAATGTTGAGAGTTCTCATTGTATAACCATGATGGAAGCTGTGAATGATGGGAAAGACCTTCATGTCTCTGTCACTATGCCTTCCATTGAGGTGGGAACAGTTGGAGGAGGCACACAGCTTGCATCACAATCAGCTTGTTTGAACTTACTTGGTGTGAAGGGTGCTAGTAAAGATTCACCTGGAGCTAATTCAAGGCAACTGGCAACAATAGTAGCTGCTTCAGTTCTTGCCGGAGAGCTTTCACTCATGTCCGCAATTGCAGCGGGTCAGCTTGTTAAGAGTCACATGAAATACAACCGATCTAGTAAAGATGTCACCAAAATTGCTTCATGA 1695 0.4413 MDVHQQSLEFSAKTKNQKHDSQSQTSLYLANAVFFGLFFSFAYFLLHRWREKIRTSTPLHVLTISEMVAVVSLIASFFYLMAFFSIAFILHPFAASTAVQYDEEEDEVEIAKTTGSCLAGVAPELPPLPPKTTVKKVAPEPVMSQLSSDDEEVVQAVVSGSIPSYSLESKLGDCRRAAAIRNQAVERVTGRSLEGLPMENFDYDSILGQCCEMPIGFIQIPVGVAGPLLLDGKEFTVPMATTEGCLVASTNRGCKAIYVSGGASAVVLRDGITRAPVVRFNSAKRASQLKFFLEDPQNFDSLAHTFNKSSRFARLQNIKATIAGKNLYTRFTCSTGDAMGMNMVSKGVQNVLDFLQSDFPDMDVIGISGNFCSDKKAAAVNWIEGRGKSVVCEAVIKEEVVKKVLKTSVESLVELNMLKNLTGSAMAGALGGFNAHASNIVSAIYLATGQDPAQNVESSHCITMMEAVNDGKDLHVSVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKDSPGANSRQLATIVAASVLAGELSLMSAIAAGQLVKSHMKYNRSSKDVTKIAS 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02721 564 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 368 393 IPR002202 GO:0004420|GO:0015936
Vivi2g02721 564 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 419 445 IPR002202 GO:0004420|GO:0015936
Vivi2g02721 564 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 237 257 IPR002202 GO:0004420|GO:0015936
Vivi2g02721 564 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 210 231 IPR002202 GO:0004420|GO:0015936
Vivi2g02721 564 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 473 494 IPR002202 GO:0004420|GO:0015936
Vivi2g02721 564 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 328 346 IPR002202 GO:0004420|GO:0015936
Vivi2g02721 564 Gene3D - 145 220 IPR023282 GO:0004420
Vivi2g02721 564 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 146 220 - -
Vivi2g02721 564 Pfam Hydroxymethylglutaryl-coenzyme A reductase 178 554 IPR002202 GO:0004420|GO:0015936
Vivi2g02721 564 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 485 492 IPR023076 GO:0004420
Vivi2g02721 564 Gene3D - 271 387 IPR009023 -
Vivi2g02721 564 Gene3D - 221 541 IPR023074 GO:0004420
Vivi2g02721 564 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 271 387 IPR009023 -
Vivi2g02721 564 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 539 552 IPR023076 GO:0004420
Vivi2g02721 564 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 271 387 - -
Vivi2g02721 564 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 374 549 - -
Vivi2g02721 564 NCBIfam hydroxymethylglutaryl-CoA reductase (NADPH) 150 554 IPR004554 GO:0004420|GO:0005515|GO:0008299
Vivi2g02721 564 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 12 558 IPR002202 GO:0004420|GO:0015936
Vivi2g02721 564 CDD HMG-CoA_reductase_classI 151 554 IPR004554 GO:0004420|GO:0005515|GO:0008299
Vivi2g02721 564 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 150 554 IPR002202 GO:0004420|GO:0015936
Vivi2g02721 564 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 330 344 IPR023076 GO:0004420
Vivi2g02721 564 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 146 543 IPR009029 GO:0015936|GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02721 Vivi-Chr2 121801540 121803968 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02721 27 560 Lipid Metabolism Gene Families AT1G76490 71.963 0.0 820
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02721 K00021 - gmx:100790033 820.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g03060 7 95318874 95322740 Vivi2g02721 2 121801540 121803968 ECH
Vivi2g02721 2 121801540 121803968 Vivi2g02721 2 121801540 121803968 ECH
Vivi2g02721 2 121801540 121803968 Vivi1g03271 1 71064569 71068183 PCT