Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03271 ATGGAGCATCGCCGGAGAGATCAAAATTCCTTTCCTACACCTGTTCACCCCGGCGAACTCCAAAGAACCCAGAAGCTCGCGTCTACCGACTCACACACAGCTTCTCTATGCATGGCTAATGCGGTTTTCTTCGGTTTATTCTTCTCCGTCGCGTACTTTCTCCTCCACCGTTGGCGCGAGAAGATCCGTACATCCACTCCTCTCCACGTCGTTACTGCGTCCGAAACCGCCGCTATTGTTTCTCTTGTAGCCTCCGCCGTTTATCTATTAGGCTTCTTTGGTGTCGGATCTCGTGCTTCCTTCCCGGAGGATCTCTCCGATGAAGAGATCCTCGCTAAGGAAGATTCAAGGATATCAGGACCGTGTCCTGCCGCACTTGTCGACACCGACGCGAAACCAGCAATAGCTCAGTCACCGAAGATTTACGACGTTGCTGCACCGGTGAATCTCTCAGCCGAAGACGAGGAGATCGTGAAATCGGTTGTTTCCGGTTCAATTCCGTCGTACTCGTTGGAATCTAGGCTTGCTGATTGTCAAAAAGCGGCGGCGATTCGTCGTTCGGCGGTTCAGACAATAACAGGGAAGTCTTTGGAGGGTTTACCGTTGGAAGGTTTTGATTACGATTCAATATTGGGTCAGTGCTGTGAGATGCCGATAGGGTTTGTGCAAATTCCGGTTGGTGTGGCAGGTCCATTGTTGTTGGATGGAATTGAGTATACAGTACCAATGGCTACAACGGAGGGTTGTCTTGTTGCGAGTACTAATAGAGGGTGTAAAGCTATTCATGCTTGCGGCGGAGCTTCGTCGGTTTTGCTTCGAGATGGAATGACTAGAGCACCTGTTGTTAGGTTTTCATCTGCTAAAAGAGCTGCTCAGTTGAAGTTTTACTTGGAAGATCCACTCAACTTTGATGCTCTTTCTCTCACTTTCAACAAGTCAAGTAGATTTGCTAGATTGCAGAGCATTCAGCCTGCTATTGCTGGCAAGAATTTGTACATTAGATTCCGTTGCAGTACAGGTGATGCCATGGGGATGAACATGGTATCAAAAGGCGTTCAAAATGTCCTTGATTTTCTCCTAAATGATTTCCCTGACATGGATGTCATTGGAATCTCTGGAAATTACTGTTCCGACAAGAAAGCGGCGGCTGTGAACTGGATAGAAGGGCGTGGTAAGTCTGTGGTGTGTGAGGCTGTAATTAAGGAAGAGGTGGTGATGAAAGTGTTGAAGACTAATGTGGAGGCATTGGTTGAGCTAAACATGCTTAAGAACCTAACTGGCTCAGCCATTGCTGGTGCTCTTGGCGGGTTCAACGCTCATGCTAGCAACATTGTCTCTGCTATCTACTTAGCCACTGGTCAAGATCCTGCTCAGAATGTGGAGAGTTCTCATTGTATTACCATGATGGAAGCTGTGAATGATGGCAAGGACCTTCACATTTCTGTCACCATGCCTTCCATTGAGGTTGGTACTGTGGGAGGAGGAACACAACTTGCATCTCAGTCAGCTTGTCTTAATTTACTTGGTGTGAAGGGTGCCAGCAAAGACTCTCCCGGCGCAAACTCTCGGCTACTGGCAACCATTGTAGCCGGATCAGTCCTCGCCGGGGAACTATCGCTCATGTCTGCAATTGCAGCTGGGCAGCTAGTTAAGAGTCACATGAAATACAACAGATCTAGCAAGGATATCTCCAAAATCGTCTCATGA 1707 0.4804 MEHRRRDQNSFPTPVHPGELQRTQKLASTDSHTASLCMANAVFFGLFFSVAYFLLHRWREKIRTSTPLHVVTASETAAIVSLVASAVYLLGFFGVGSRASFPEDLSDEEILAKEDSRISGPCPAALVDTDAKPAIAQSPKIYDVAAPVNLSAEDEEIVKSVVSGSIPSYSLESRLADCQKAAAIRRSAVQTITGKSLEGLPLEGFDYDSILGQCCEMPIGFVQIPVGVAGPLLLDGIEYTVPMATTEGCLVASTNRGCKAIHACGGASSVLLRDGMTRAPVVRFSSAKRAAQLKFYLEDPLNFDALSLTFNKSSRFARLQSIQPAIAGKNLYIRFRCSTGDAMGMNMVSKGVQNVLDFLLNDFPDMDVIGISGNYCSDKKAAAVNWIEGRGKSVVCEAVIKEEVVMKVLKTNVEALVELNMLKNLTGSAIAGALGGFNAHASNIVSAIYLATGQDPAQNVESSHCITMMEAVNDGKDLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKDSPGANSRLLATIVAGSVLAGELSLMSAIAAGQLVKSHMKYNRSSKDISKIVS 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03271 568 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 377 553 - -
Vivi1g03271 568 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 275 391 - -
Vivi1g03271 568 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 543 556 IPR023076 GO:0004420
Vivi1g03271 568 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 24 562 IPR002202 GO:0004420|GO:0015936
Vivi1g03271 568 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 334 348 IPR023076 GO:0004420
Vivi1g03271 568 NCBIfam hydroxymethylglutaryl-CoA reductase (NADPH) 154 558 IPR004554 GO:0004420|GO:0005515|GO:0008299
Vivi1g03271 568 MobiDBLite consensus disorder prediction 1 24 - -
Vivi1g03271 568 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 150 224 - -
Vivi1g03271 568 Pfam Hydroxymethylglutaryl-coenzyme A reductase 182 558 IPR002202 GO:0004420|GO:0015936
Vivi1g03271 568 CDD HMG-CoA_reductase_classI 155 558 IPR004554 GO:0004420|GO:0005515|GO:0008299
Vivi1g03271 568 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 154 558 IPR002202 GO:0004420|GO:0015936
Vivi1g03271 568 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 275 391 IPR009023 -
Vivi1g03271 568 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 148 547 IPR009029 GO:0015936|GO:0016616
Vivi1g03271 568 Gene3D - 275 391 IPR009023 -
Vivi1g03271 568 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 489 496 IPR023076 GO:0004420
Vivi1g03271 568 Gene3D - 225 553 IPR023074 GO:0004420
Vivi1g03271 568 Gene3D - 150 224 IPR023282 GO:0004420
Vivi1g03271 568 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 241 261 IPR002202 GO:0004420|GO:0015936
Vivi1g03271 568 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 332 350 IPR002202 GO:0004420|GO:0015936
Vivi1g03271 568 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 214 235 IPR002202 GO:0004420|GO:0015936
Vivi1g03271 568 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 423 449 IPR002202 GO:0004420|GO:0015936
Vivi1g03271 568 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 372 397 IPR002202 GO:0004420|GO:0015936
Vivi1g03271 568 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 477 498 IPR002202 GO:0004420|GO:0015936
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03271 Vivi-Chr1 71064569 71068183 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03271 2 564 Lipid Metabolism Gene Families AT1G76490 68.761 0.0 801
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03271 K00021 - gmx:100815480 870.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03271 1 71064569 71068183 Vivi1g03271 1 71064569 71068183 ECH
Vivi2g02721 2 121801540 121803968 Vivi1g03271 1 71064569 71068183 PCT