Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06789 ATGACTCCTCTCCCAAAAACACTCCACTACCACCACCCCTCCTTCAATCACCGCCATTCTCCATTCCCTCTACCTTCCTCAACCTTCTCCATCCGCCCTCTACCTCCTCGCCACTTCTCCTCTCCCCCATTCTTATCATCATCATCATCATCATCATCATCCATCAAAGCCTCATCCTCCTCATCCTCATCCTCCCCCTCACCAAAACCCCAAAACCCTTTTTCCCAATTACTCAAACTCCTAAACCCCTTTTACTCACCTCTCTTCGAACCCGCTTACGTCGCAGTAGCACTTCTCGCATTCTTCTTGTTTCGCTTTCAACAAAATCCTGCCACCGTAACATCACCACTCCCACCTCCTCCAGCCCAATCTTCCACCACCACCGCCGCATCACCACTTCCACCTCCTCCTGAAGAATCTTCCACTGCCACCACCACAACCACAACTGACGAGAATTCATCCGAAAATAATTATCTAATCGATGACATCCTGATTGAAACTTGCAGCGATGTGAACGCTCTCCGCTCACTCGCGGAGGAGAAAGTGAAGGCGAAAAAACTAAGCGAAGCGATTCGTGCTGTGGACCGTATAATTGAACTCGAACCAGAGGAATTTGATTTACATTTACTGAAAGCACATTTGCATTGTTACAATGGGGAACATGAACTGGCTAAGAACGGGTTTGAACTTACTTTGAATCGAGATCCGTTTAATTCTGAGGCTTATCGCGGTCTTCTGATGGCGAATATGGAATTGAAGGAGCCGTTGGAGGGTTTTTTGAATAGGGTTGATGAAGTAGTGAAGTTTTTCGAGGAGAAAAAGATGGAGGCGGAGGCGAGGGATTTTAAGCTTTTGATTGCACAGGTGAAGGTAATGCAAGAGGATTATTCGGGTGCGTTGAAGGTGTATGAGGAAATTGTGAAGGAAGAACCTAGTGACTTTAGACCTTATTTGTGTCAGGGTGTTGTGTATACTCTGCTTAGGAAGAATGATGAAGCTGCGAAACAGTTTGAGGAGTATAGGAAACTTGTTCCGGAGAATCATCCTTATAAAAAGTTATTTGAGGATAACACTCAGATTTTGTCGAAGAAGATTGAGAAGGGAGGAATAGAAGCAAAGATTTGA 1125 0.4533 MTPLPKTLHYHHPSFNHRHSPFPLPSSTFSIRPLPPRHFSSPPFLSSSSSSSSSIKASSSSSSSSPSPKPQNPFSQLLKLLNPFYSPLFEPAYVAVALLAFFLFRFQQNPATVTSPLPPPPAQSSTTTAASPLPPPPEESSTATTTTTTDENSSENNYLIDDILIETCSDVNALRSLAEEKVKAKKLSEAIRAVDRIIELEPEEFDLHLLKAHLHCYNGEHELAKNGFELTLNRDPFNSEAYRGLLMANMELKEPLEGFLNRVDEVVKFFEEKKMEAEARDFKLLIAQVKVMQEDYSGALKVYEEIVKEEPSDFRPYLCQGVVYTLLRKNDEAAKQFEEYRKLVPENHPYKKLFEDNTQILSKKIEKGGIEAKI 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06789 374 Coils Coil 260 280 - -
Vivi1g06789 374 Gene3D Tetratricopeptide repeat domain 279 373 IPR011990 GO:0005515
Vivi1g06789 374 MobiDBLite consensus disorder prediction 114 139 - -
Vivi1g06789 374 MobiDBLite consensus disorder prediction 114 155 - -
Vivi1g06789 374 ProSiteProfiles TPR repeat profile. 171 204 IPR019734 GO:0005515
Vivi1g06789 374 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 50 350 - -
Vivi1g06789 374 SMART tpr_5 205 238 IPR019734 GO:0005515
Vivi1g06789 374 SMART tpr_5 314 347 IPR019734 GO:0005515
Vivi1g06789 374 SMART tpr_5 171 204 IPR019734 GO:0005515
Vivi1g06789 374 SMART tpr_5 280 313 IPR019734 GO:0005515
Vivi1g06789 374 MobiDBLite consensus disorder prediction 140 155 - -
Vivi1g06789 374 Gene3D Tetratricopeptide repeat domain 165 278 IPR011990 GO:0005515
Vivi1g06789 374 SUPERFAMILY TPR-like 171 349 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06789 Vivi-Chr1 160164079 160165203 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06789 - - cam:101497721 367.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g06789 1 160164079 160165203 Vivi1g06789 1 160164079 160165203 ECH
Vivi6g03704 6 131784789 131786195 Vivi1g06789 1 160164079 160165203 PCT