Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06496 ATGAAGCAAATTCGTCAACGCCAAAGGATCATTATTCTCTCTCTCCTCTCTCTTTCCGTTGTTGCTCCTCTCATTTTCCTCGGGAGAAGAGAGTTCCTTCAAGATTTGTATCGCGCTACATACAATACAGATAGTTTGAAGTTAAATGTTGTAGAACAGGGAGGTGCTGAAGAATTTAAAGAGCAAAATCTAGTTGGTTACAAAGAAAAAGATGTTGTTTCAACAATTGGTTACGATTCAAAAAGGAATAATGATGCTGAGGAGTCTAGAATTGCAGCATTGGAAAAAAATGTTTCAGGATTCAGACATGATGAAAGACAAGATGAGGATGCTCGAAAAAAAGATTCATCCTCCACAGATGAAGATATAAATGTACATGATGTTCCGTATAGAATGTCAAAGGAGAATATTAAAGTGACAAATAGGCCATCAGGTCGAAAAGAAGACCGTCGTCATATTTTAAACCCTCCCTCTCAGGAAGTGAAAAATCAGAAGCTTCAAGAGATTAAGGATCAAATTTTAATGGCTAAAGTATACTTGAAGTTTGCACCGTCTAGCAGCAACTCACACTTGAAGGAGCTGGAGCTGCAAATGAGAGAGATGGAACGAAAAGTAGAAGGAGTCACCCGGGATTTAGATTTGTCAAGGAGTGTTTTGCAGGCAATGAGACACATGGAAGCCTCGCTATCTATTGTTAGCCGTTCTTTCTCAGACTGCTCTATGGTTTCTAAGCTTCAAGCAATGAAGCGCAAAACTGAAGAGCAAGTTCGTTTTCAGAGAAGCCAAGCAACATATCTTCTTCATCTTGCTGTAAGGACTGCCCAGAAAAACTTTCACTGTCTCTCTATGAGGCTGACTACTGAATATTTTTCCCTGAGACCTGAGGAGAGAGAGCTTCCAAATGAAAATAAGATTCATCTTCCAGATCTTTATCATTATGCTGTCTTCTCCGACAATGTTCTGGCATGTGCAGTTGTTGTTAACTCTACTGTCTCTACTGCTAAGGAACCAGAGAAACTTGTTTTCCATATAGTGACCGATTCACTCAACTTGCCAGCAATCTCAATGTGGTTCTTTTTAAACCCTCCTGGCAAAGCCACAGTCCATGTACAGAGCACAGAAAACTTTGAATGGTTGTCCAAATACAATACATTCGGTATAAATAATAACAGCGATCCAAGATACACTTCTGAATTGATCTACTTGCTTTTCTACCTGCCAGACATTTTCCCTGCCCTAAATAAGATTGTGATCTTTGATCATGATGTGGTGGTTCAACAAGATCTCAGTGGACTATGGAATACCGATATGAAGGGAAATGTTATTGGAGCTGTTGGAACTTGTCAGGAAGGAAAAACCCCATTTCATAGGATTGATGCGTTCGTAAACTTCTCAGATCCACTAATCGGAGAGAGTTTTGATGCCAATTCTTGCACATGGGCGTTTGGGATGAATTTGTTTGATTTGCAACAATGGAGGAGACATAATTTAACAGCTGTTTATCACAAATATTCGCAAATGGGTTCTGAGAAGCCATTATGGAATCTGAACAATGCACGCCTTCCTTTAGGTTGGCTCACCTTCTATAACAAGACGGAGGTGTTGGACAGACGATGGCACATTCTTGGCCTCGGTCATAACTCGGGAGTCGATCGAAATGAGATTGAGCAGGCTGCCGTTATACACTATGATGGTATTAGGAAGCCATGGTTAGATATTGCAATGGGCAGATATAAAAGTTATTGGACCAAATATTTGAATTTTGACCACCCTTTTCTGCAACAGTGCAATCTTCAGGCGTAG 1803 0.4027 MKQIRQRQRIIILSLLSLSVVAPLIFLGRREFLQDLYRATYNTDSLKLNVVEQGGAEEFKEQNLVGYKEKDVVSTIGYDSKRNNDAEESRIAALEKNVSGFRHDERQDEDARKKDSSSTDEDINVHDVPYRMSKENIKVTNRPSGRKEDRRHILNPPSQEVKNQKLQEIKDQILMAKVYLKFAPSSSNSHLKELELQMREMERKVEGVTRDLDLSRSVLQAMRHMEASLSIVSRSFSDCSMVSKLQAMKRKTEEQVRFQRSQATYLLHLAVRTAQKNFHCLSMRLTTEYFSLRPEERELPNENKIHLPDLYHYAVFSDNVLACAVVVNSTVSTAKEPEKLVFHIVTDSLNLPAISMWFFLNPPGKATVHVQSTENFEWLSKYNTFGINNNSDPRYTSELIYLLFYLPDIFPALNKIVIFDHDVVVQQDLSGLWNTDMKGNVIGAVGTCQEGKTPFHRIDAFVNFSDPLIGESFDANSCTWAFGMNLFDLQQWRRHNLTAVYHKYSQMGSEKPLWNLNNARLPLGWLTFYNKTEVLDRRWHILGLGHNSGVDRNEIEQAAVIHYDGIRKPWLDIAMGRYKSYWTKYLNFDHPFLQQCNLQA 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06496 600 Pfam Glycosyl transferase family 8 280 574 IPR002495 GO:0016757
Vivi1g06496 600 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 313 591 IPR029044 -
Vivi1g06496 600 Coils Coil 242 262 - -
Vivi1g06496 600 SUPERFAMILY Nucleotide-diphospho-sugar transferases 311 597 IPR029044 -
Vivi1g06496 600 Coils Coil 191 211 - -
Vivi1g06496 600 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 391 598 IPR029993 GO:0047262
Vivi1g06496 600 MobiDBLite consensus disorder prediction 95 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06496 Vivi-Chr1 147583717 147589037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06496 1 600 Glycosyltransferase AT1G06780 45.382 0.0 542
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06496 K13648 - gmx:100819255 786.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g06496 1 147583717 147589037 Vivi1g06496 1 147583717 147589037 ECH
Vivi6g03909 6 135273002 135283305 Vivi1g06496 1 147583717 147589037 PCT