Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06495 ATGGCAACCATCTCAGCTACCACCGCAACCGCCTCAATCTCCCGTGCATGTCTTGCACAGAAGAGACCTCTTGCAGTCTCATCCTCACCTGTTCTTGGATTGCCAACAATGGCTAAGGTTGGAAGAGTTAAGTGTTCAATGGAAGGAAAACCTTCATCCGTGAATGAAAGCAGCTCAAAGATGGGAATGACAGCATCTTTGTTATCAGCTGCATGTGCTGCAGCCATGTCAAGCCCAGCAGCCATGGCATTAGTGGATGAAAGAATGAGCACTGAAGGAACCGGTCTTCCCTTTGGACTCAGCAACAACCTTCTTGGTTGGATCCTTTTTGGTGTGTTTGGTCTTATTTGGGCTCTCTATTTTATTTATGCTTCCGGTCTTGATGAGGATGAAGAGTCTGGTTTGTCCCTTTAA 414 0.4662 MATISATTATASISRACLAQKRPLAVSSSPVLGLPTMAKVGRVKCSMEGKPSSVNESSSKMGMTASLLSAACAAAMSSPAAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFIYASGLDEDEESGLSL 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06495 137 PANTHER PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC 1 137 IPR009806 GO:0009507|GO:0009523|GO:0015979
Vivi1g06495 137 Pfam Photosystem II reaction centre W protein (PsbW) 1 137 IPR009806 GO:0009507|GO:0009523|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06495 Vivi-Chr1 147582712 147583476 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06495 K02721 - gmx:100305788 181.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g06495 1 147582712 147583476 Vivi1g06495 1 147582712 147583476 ECH
Vivi6g03910 6 135283440 135284120 Vivi1g06495 1 147582712 147583476 PCT