Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06412 ATGGATCTCACTAAAGTCACCCTAGAGATCTTCTCAAAACTAGAACACAACTGGCTTTCTCTTTCTCATTGCAAAGACACATCCACCACCAAAACCCGCATTCTCAGCATTGACGGCGGAGGAACCACCGCCATTGTAGCCGGCGCTGCATTAATCCATCTCGAAGATCAGATCCGTCTCCAAACCTCTGATCTCCACGCTCAGATATCAGATTTCTTCGACATTGTAGCCGGTACCGGCATTGGCGCCATTCTTGCCGCAATGATAACCGCCGCCGATTCATTAGGCAGGCCTCTGTATACTGCCAGAGAAGCTGTACGCATTATCACAGAGAGAAACTCGGAACTCTACAAACTCAAATCCGCCGGAATATTTCGCCGGCGGCGAAGGAGATTTTCGTCGAAGAACATGGATAACGTGTTGAAGCAAGTGTTCTTTAGAAAAGAAGATGCACGGATGTTGACCTTGAAGGACACGTGTAAACCGTTGCTTATACCTTGCTTTGACCTCAAGAGTTCGGCTCCATTCGTCTTTTCACGAGCCGATGCGTCAGAATCTCCTAGCTTCAACTTCGAACTCTGGAAAGTATGCCGCGCCACGTCAGCAACGCCGAGTCATTTCAAGCCGTTCAACTTTTCTTCCCTCGACGAAAAAACCTCTTGCTCCGCCGTAGACGGTGGTTTGGTGATGAACAATCCTACCGCTGCGGCGGTAACGCATGTTTTACATAATAAACGCGATTTTCCAACGGTGAACGGCGTGGAGGATCTTTTGGTCCTTTCCTTGGGGAACGGATCGTCGAACTCGAAAACATGTGAGAGCCGCACGTGCTCAACGCCGTCGGTGGTTGACATTGTTCTCGACGGCGTTTCCGAGACTATTGACCAAATGCTTGGAAACGCCTTCTGTTGGAATCGTACGGATTACGTCAGAATTCAGGCATTTGGTTTGGGGAACGAAGGAGTGAAGAAAGATGGAGATGCGGAAGAGGTGGTGCTGAAGGAAAGAGGATTGGAGTCGTTACCGTTTGGAGGGAAGCGGTTACTGACGGAGACAAACGGAAATAGGATTGATAGCTTCGTGCAACGTCTTGTTGCTAGTGGGAAACCAAGCCCACCGTTCAGTCCTTGCAAGGACTCAGCCGTCGCTACTCTTGCTAACGGACGTTAG 1170 0.4966 MDLTKVTLEIFSKLEHNWLSLSHCKDTSTTKTRILSIDGGGTTAIVAGAALIHLEDQIRLQTSDLHAQISDFFDIVAGTGIGAILAAMITAADSLGRPLYTAREAVRIITERNSELYKLKSAGIFRRRRRRFSSKNMDNVLKQVFFRKEDARMLTLKDTCKPLLIPCFDLKSSAPFVFSRADASESPSFNFELWKVCRATSATPSHFKPFNFSSLDEKTSCSAVDGGLVMNNPTAAAVTHVLHNKRDFPTVNGVEDLLVLSLGNGSSNSKTCESRTCSTPSVVDIVLDGVSETIDQMLGNAFCWNRTDYVRIQAFGLGNEGVKKDGDAEEVVLKERGLESLPFGGKRLLTETNGNRIDSFVQRLVASGKPSPPFSPCKDSAVATLANGR 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06412 389 Pfam Patatin-like phospholipase 35 237 IPR002641 GO:0006629
Vivi1g06412 389 PANTHER PATATIN-LIKE PROTEIN 6 1 368 - -
Vivi1g06412 389 CDD Pat17_PNPLA8_PNPLA9_like 34 341 - -
Vivi1g06412 389 SUPERFAMILY FabD/lysophospholipase-like 31 316 IPR016035 -
Vivi1g06412 389 Gene3D Cytosolic phospholipase A2 catalytic domain 21 370 - -
Vivi1g06412 389 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 35 238 IPR002641 GO:0006629
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06412 Vivi-Chr1 144782301 144784138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06412 1 389 Acyl Lipid Metabolism Gene Families AT3G63200 69.367 0.0 544
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06412 - - gmx:100795441 632.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g06412 1 144782301 144784138 Vivi1g06412 1 144782301 144784138 ECH
Vivi6g03981 6 136765339 136767459 Vivi1g06412 1 144782301 144784138 PCT