Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06078 ATGGCATCATCATGTGTAGGAACTCTATCATCACCCAACCCTTATCTATTTTCCTCAAAAACCAAACATTTGGCTTCAACAAGGACAAGAGTTGTAAGAGCAGCTGTCACAGAAAAACTTGGCATCAAGATTGAGAGGAACCCTCCTGAGTCCAAGCTCACTCAACTTGGTGTTAGACAATGGCCCAAATGGGGTTGTCCTCCAAGCAATTTTCCATGGACATATGATGCAAAAGAGACATGCTATCTTCTAGAAGGAAAAGTGAAGGTCACTCCTAGTGGAGCTAATGAAGCTGTTGAAATTGCTGCTGGTGACTTGGTTGTGTTTCCTAAAGGGATGAGTTGTACTTGGGATGTTTCCGTTGGTGTTGATAAGCACTATAAATTTGAATAA 393 0.4173 MASSCVGTLSSPNPYLFSSKTKHLASTRTRVVRAAVTEKLGIKIERNPPESKLTQLGVRQWPKWGCPPSNFPWTYDAKETCYLLEGKVKVTPSGANEAVEIAAGDLVVFPKGMSCTWDVSVGVDKHYKFE 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06078 130 CDD cupin_TM1112-like 61 129 - -
Vivi1g06078 130 SUPERFAMILY RmlC-like cupins 49 127 IPR011051 -
Vivi1g06078 130 Gene3D Jelly Rolls 31 129 IPR014710 -
Vivi1g06078 130 PANTHER OS04G0445200 PROTEIN 16 130 - -
Vivi1g06078 130 Pfam EutQ-like cupin domain 54 127 IPR008579 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06078 Vivi-Chr1 135420744 135421422 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06078 K06995 - gmx:100527470 202.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g05663 2 184943340 184945216 Vivi1g06078 1 135420744 135421422 PCT