Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05530 ATGTCTCTGGTCACCGACGAGATCAAAGCCAAGTCAGAGGTATACTATGGAGATGAAATCTGCCAAATCAAGTCCAAGGAACTTCTCAAGGAAATAAGCATGCCCAATGGCCTTTTGCCATTGAAAGACATAGAAGAATGTGGATACCATAGAGAGAGTGGTTTTGTGTGGCTTAAGCAGAAAGCAAGCTATAACCACAAGTTTGTGAAAGTTGATAGGCATGTGATTTATGGTACTGAAGTCACTGCCACTGTTGAGGTTGGTAAGATCAAGAAGCTGACTGGTGTGAAGGTGAAGGAGCTCTTGATTTGGCTTCCTCTTCATGAAATCCTTATGGATGAACCACCTACTGGCAAAATCACCTTCAAGGCTGTTACTGGGCTTTTCAGGACATTCCCTGCTTCAGCTTTTGAGATTGAAGAGGAAGTTAAGGATGTGAAGGAAGAAAACAAAGATCAAGTCAAAGAAACTGCACCAGCTACTGCTGCTGCTCCTGTTGAAGTCAAAGAGGTCTGA 516 0.4322 MSLVTDEIKAKSEVYYGDEICQIKSKELLKEISMPNGLLPLKDIEECGYHRESGFVWLKQKASYNHKFVKVDRHVIYGTEVTATVEVGKIKKLTGVKVKELLIWLPLHEILMDEPPTGKITFKAVTGLFRTFPASAFEIEEEVKDVKEENKDQVKETAPATAAAPVEVKEV 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05530 171 SUPERFAMILY At5g01610-like 4 145 IPR036758 -
Vivi1g05530 171 Coils Coil 136 156 - -
Vivi1g05530 171 Pfam Protein of unknown function, DUF538 26 138 IPR007493 -
Vivi1g05530 171 Gene3D - 5 149 IPR036758 -
Vivi1g05530 171 MobiDBLite consensus disorder prediction 148 171 - -
Vivi1g05530 171 PANTHER T31J12.3 PROTEIN-RELATED 21 140 IPR007493 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05530 Vivi-Chr1 121475842 121476589 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05530 - - gmx:100500427 221.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g05530 1 121475842 121476589 Vivi1g05530 1 121475842 121476589 ECH
Vivi6g04839 6 152246271 152246960 Vivi1g05530 1 121475842 121476589 PCT