Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05521 ATGGCTCCTACTGATATTGTAACTGCCGCAACCAACATCACCGACGCTCAATCCAAGACAGCAAAACGTGCCTTTGTCACGTTCCTTGCCGGAAACGGTGACTACGTCAAAGGTGTTGTTGGCTTAGCAAAAGGTCTCCGTAAAGTGAAAACCAAGTACCCTCTTGTAGTTGCAGTGTTGCCGGATGTTCCGGCGGAACACCGGAGTATTCTCATCTCTCAAGGTTGCATTGTGAGAGAGATTGAACCTGTTTACCCACCTGAGAACCAAACACAGTTCGCTATGGCTTATTATGTCATCAACTATTCCAAACTACGTATTTGGGCTTTTGAGGAATATGACAAGATGATTTACCTTGATGGTGATATACAAGTATTTGAAAACATTGACCATTTATTTGAGTTGCCAAATAATTATTTCTATGCTGTGATGGATTGTTTTTGTGAGGCCACGTGGGGTCATAGTAAGCAATATGAAATCGGTTACTGTCAGCAATGTCCTCACAAGGTTCAATGGCCTACTCATTTTGGTCCCAAACCACCTCTTTACTTCAATGCTGGCATGTTTGTTTATCAACCTAATATGGATACTTATCTTGATCTTCTTCAAAAACTTCAACTCACTAAACCAACTTCCTTTGCTGAACAGGATTTTTTGAACATGTACTTCAATGACAAATATAAGCCAATTCCTAATGTTTACAATCTTGTGCTGGCTATGTTGTGGCGTCATCCTGAAAATCTTGAGCTTGAGAAAGTTAAAGTTGTTCATTATTGTGCTGCTGGATCTAAGCCGTGGAGGTACACAGGTGAGGAGGAGAATATGCAGAGAGAAGATATAAAGGTGTTGGTGAAGAAATGGTGGGAGGTGTATGAAGATGAGAGTTTGGATTACAAGGAAGTGATTAATGCGAATCGCTTAACATCAGCAATTTTGGAAGCTGCTGGTATCAACTTTGCGCGCGCGCCAAACGCTGCTTAA 981 0.4149 MAPTDIVTAATNITDAQSKTAKRAFVTFLAGNGDYVKGVVGLAKGLRKVKTKYPLVVAVLPDVPAEHRSILISQGCIVREIEPVYPPENQTQFAMAYYVINYSKLRIWAFEEYDKMIYLDGDIQVFENIDHLFELPNNYFYAVMDCFCEATWGHSKQYEIGYCQQCPHKVQWPTHFGPKPPLYFNAGMFVYQPNMDTYLDLLQKLQLTKPTSFAEQDFLNMYFNDKYKPIPNVYNLVLAMLWRHPENLELEKVKVVHYCAAGSKPWRYTGEEENMQREDIKVLVKKWWEVYEDESLDYKEVINANRLTSAILEAAGINFARAPNAA 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05521 326 Pfam Glycosyl transferase family 8 27 269 IPR002495 GO:0016757
Vivi1g05521 326 SUPERFAMILY Nucleotide-diphospho-sugar transferases 26 299 IPR029044 -
Vivi1g05521 326 FunFam Hexosyltransferase 21 299 - -
Vivi1g05521 326 CDD GT8_Glycogenin 23 293 - -
Vivi1g05521 326 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 20 300 IPR029044 -
Vivi1g05521 326 PANTHER GLYCOGENIN SUBFAMILY MEMBER 12 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05521 Vivi-Chr1 121159193 121160749 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05521 1 326 Glycosyltransferase AT1G56600 70.536 1.81e-180 500
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05521 K18819 - gmx:548050 566.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g05521 1 121159193 121160749 Vivi1g05521 1 121159193 121160749 ECH
Vivi6g04676 6 149392942 149394639 Vivi1g05521 1 121159193 121160749 ECH