Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05513 ATGGAAGCTTCTTTCTACCTCTTTTTTCTCTCTTCTCTCTTAATTTCATGTTCTGGATCTTTGGTAGGTTTTTCCTATCATGAGAGAGGAGACACTTGGAAATCATTTCTTCAGCCGAGCAAAGTTTCTTCGTCTCAGATTCGAGTTTTCGTCACAGATCATAGAATTTCGAGCACTCTTACCAACTCAAACATGTTAGTTGATCTATACATAAGCAAAAGCCAAGTTGAAAATTTCATTACTTCAAAACCTTCAACAACTTCTGAACTAAAAGCTCAACTTGTGAATTTTCTTCCACGTTCAAACATCAAAAGCATCACTGTTAGCTGTGGAAGTGAGTGTTTACTCCAAAACGAGATACCTTTGATTATGCATTCTCTTAAATCAATCCATTCAATTATCAGAGATCTACACATAGGTAAGGAAGTAAAAGTCTCGGTAGCATTTCCACTTCAATTCTTGACGAAGTTGAATCCATCACAAGAACATGGAATTCGTAAGCTACTTTCATTTATAGAGGAAACAAAATCGTCCGTGATGATAGAAGAGAGCATTGATGGAGAATTAAGCGCGGAGGATCATTTTGCTCAAACTGTTATCAAGCGAGCCGCTCTTGCTGCTTCTGTTCTTCCTTGCGAAGATGCTTCTGTGATTCTAACAATCAAGAGTTCAGTTAAACCGAGTTCAGTAGAATTAGCCGAATTTAGTAAAAGAGTATCGAAATATTTAGCAGCGAGAAGACCTACTGCGAAAAGAATAGCTGCATTATATGTAGAACTGCGTAAAACAGAAGATTTTTCAATGAAAGAGCTCAAAAGGGAAGAAGAGAAAGAAAATTTTCCATTGTCTAGAAGAGAGATCTTAAGCAAATTCCACAGAAGAAAAACTCTAGATAACACAAACAGTGCAACAAACACAGTTTACCCTACAAATCCAACCCCAAATCCAACACCAGTGATCACACCCTCAGATACGCCAACCATTATAGCGGTTCCTTCCACAAATCCTGTCACGATTTCCCCTACAAATCCAGCTGCAATGCCTGTAACGGTTCCTTCTACTACACCTGTTGTTCCTTCTACTACTCCACCTGCTGTTCCTTTACCTCCAACAAATCCAACCAATTCACCAGTTCCGGTCTTCAATCCAGCTACAACGCCTTCAACAGTCCCAGGTGCACAACCAGTAACCAACCCGGTAACGTCTAATCCACCTCCATCGGGAAGTGTTCCTGTTCCTGTCATAAACCCTCCTTCAAACACAAATGCTCCTTCCATTCAAGGACAGAGTTGGTGTGTGGCGAAATCAGGTGCTCCACAAGCCTCCCTTCAATCAGCATTGGATTATGCTTGTGGAATGGGTGCTGATTGTTCTCAGATACAGCAGGGTGGGGCTTGTTACAGTCCAGTCACTTTGCAGAGTCATGCTTCTTTTGCTTTCAATAGTTACTATCAAAAGAATCCAGCTCCAACAAGTTGCGACTTCGGAGGCGCTGCCACCTTGATCAACACAAATCCAAGTTCTGGTTCTTGCATTTTTCCATCATCGTCGTCGTCGTCATCCTCAACGCCAACAATATCATCCCCAACACCACCTACACAATCAACTTCAACTTCAATACCTCCACCAAGTCCAATAACAACTGCACCATCTATTACAACAATAGCTCCACCATCTATTCCAACAATAGCTCCACCATCAATTCAAACAGCTCCATCATCAATTCCAACGGCTCCACCAACATCTTCAGGATCAGGAACAGGCACTTTCGGCTATGGTACCCCGCCTTCAGTGTTAAATTCAAGCAGCCCAGATTCAGGTACAGTGCCAGATTTTGGGTCCGATAGCCCTCCTGTTGTAAACACAACGTCTGCCGCACACCCCCGAGCTCTAAAATCTTTTACTGGCTGCATAATTTTGATGATTCCATTTGTCACTGCCAGACTCAGCATGCTACCATAG 1962 0.422 MEASFYLFFLSSLLISCSGSLVGFSYHERGDTWKSFLQPSKVSSSQIRVFVTDHRISSTLTNSNMLVDLYISKSQVENFITSKPSTTSELKAQLVNFLPRSNIKSITVSCGSECLLQNEIPLIMHSLKSIHSIIRDLHIGKEVKVSVAFPLQFLTKLNPSQEHGIRKLLSFIEETKSSVMIEESIDGELSAEDHFAQTVIKRAALAASVLPCEDASVILTIKSSVKPSSVELAEFSKRVSKYLAARRPTAKRIAALYVELRKTEDFSMKELKREEEKENFPLSRREILSKFHRRKTLDNTNSATNTVYPTNPTPNPTPVITPSDTPTIIAVPSTNPVTISPTNPAAMPVTVPSTTPVVPSTTPPAVPLPPTNPTNSPVPVFNPATTPSTVPGAQPVTNPVTSNPPPSGSVPVPVINPPSNTNAPSIQGQSWCVAKSGAPQASLQSALDYACGMGADCSQIQQGGACYSPVTLQSHASFAFNSYYQKNPAPTSCDFGGAATLINTNPSSGSCIFPSSSSSSSSTPTISSPTPPTQSTSTSIPPPSPITTAPSITTIAPPSIPTIAPPSIQTAPSSIPTAPPTSSGSGTGTFGYGTPPSVLNSSSPDSGTVPDFGSDSPPVVNTTSAAHPRALKSFTGCIILMIPFVTARLSMLP 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05513 653 Pfam X8 domain 431 500 IPR012946 -
Vivi1g05513 653 FunFam Glucan endo-1,3-beta-glucosidase 4 425 517 - -
Vivi1g05513 653 PANTHER BETA-1,3 GLUCANASE 428 521 IPR044788 -
Vivi1g05513 653 MobiDBLite consensus disorder prediction 512 534 - -
Vivi1g05513 653 Gene3D - 425 527 - -
Vivi1g05513 653 Gene3D Glycosidases 22 183 - -
Vivi1g05513 653 SMART X8_cls 430 513 IPR012946 -
Vivi1g05513 653 MobiDBLite consensus disorder prediction 566 621 - -
Vivi1g05513 653 MobiDBLite consensus disorder prediction 512 621 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05513 Vivi-Chr1 120982278 120985052 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05513 392 516 Glycoside Hydrolase AT2G05790 48.438 6.25e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05513 - - tpra:123886415 687.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g05513 1 120982278 120985052 Vivi1g05513 1 120982278 120985052 ECH
Vivi6g04777 6 151137672 151139835 Vivi1g05513 1 120982278 120985052 PCT