Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05355 ATGGAAACTATGTGTTTAAAAACTGGGATTGTTCCCTCGATCTCCATTTCCGGATCGTTAGATACACGCGCCTCCCCGTCTCAGGTTAGTGCGGTGGGTCGTTCCGCCGTGGATAAACCGTCGCGAAATTCTATATTCTCTAGATTCTCGTTTCGGTACCCTCTGGAGTCGTTATGGCCGGGACAACGGAGTTCTGTGAGTAAGAATAAAACGTTTAGCGGTTTGTCTCTCGATGATGCTGTTATGGCGGAGAATGGAGAGACGGAATCGGTTAAAGATGAGGGGGAGGAAGGAAGCGTGAATGGCGGGGAGGGGAAGAGAGAGAATTGGGTTTTGAAGATTTTGCATGTGAAGTCTGTGTGGAAAGGGGAACGAGGGAATGAGAGGGAAGGAACCGAGGACGATGAGAACAATGGTGGTGGTGATGAGGTTTGTGATGGTTGCGCGGTTGAGAATGATGATGGCGAAAAAGGAGAGGATTTTGAATTTGATAGAGGGTCGTTTTCGAAAATGTTGAGGAGGGTGTCTTTGGCTGAGGCTAGATTGTATGCGCAGATGTCGCACTTGGGGAGTTTGGCTTATTCTATACCCAATATTAAGCCCGGGAAACTGTTAAAACATTACGGTCTGCGTTTTGTAACTTCATCGCTAGAGAAAAAGGAATTGGCAGCAAAATCTGAGAAAAATCCTCAGGAAGTTGAAAGTCAAGAGAAGCCAGAAGAAACAAAGGAGTCAAATAATGGTGGATATAGGATAAGTGCGACGGCTGCTTATAATATTGCTGCCTCCGCTGCTTCGTATCTGCACGCCCAGACAAAGAGCATACTTCCGTTCAAATCTTCAAATACGGTGGCTGGTGAAGGAAGCAATGAAGGCCTTAACATGACGGACGCAGAGGTGGCATCTTTGATGGCGACTACTGATTCAGTGACTGCAGTTGTTGCAGCAAAAGAGGAAGCAAAACAAGCTGTTGCAGATGATCTTAACTCAACTCGTTCATCACCTTGTGAATGGTTCATCTGCGATGACAACCAGAGTGGTACAAGATTTTTCGTTATTCAGGGTTCTGAGTCATTAGCATCTTGGCAAGCAAATCTACTTTTTGAGCCAATTAAATTTGAGGGTTTGGATGTCCTTGTTCACCGAGGTATTTATGAGGCTGCTAAAGGGATATATCAACAGATGCTGCCGGAAGTTCATGCGCACCTAAAATCCCGAGGCTCTCGTGCAAATTTTCGTTTCACCGGACATTCTCTTGGCGGAAGCTTGGCATTACTTGTAAACCTCATGCTGTTCATAAGAGAAGAAGTACCTATCTCCTCTTTACTCCCGGTGATAACATTTGGTGCCCCTTCTATCATGTGTGGAGGTGACACTCTACTAGACAAGCTCGGTCTTCCGCGAAGTCATGTTCAGGCAATTATAATGCACAGAGACATCGTACCACGGGCGTTTTCTTGCAATTACCCCGACCATGTTGCAAAAATCTTAAAGGCTATCAATGCGAACTTTCGGAATCACCCGTGTCTCAATAACCAAAAGCTACTCTATTCACCAATGGGTGAACTATTGATTCTACAACCAAATGAGAAATTTTCACCAAGCCACCAGCTTCTGCCACAAGGCAGTGGCTTATATCTTCTGTGCTGTCCTTTGTCAGAACCTAACGACACTGAGAAGAAGCTCCATGCCGCGCAATTGACGTTCTTGAACACACCTCATCCACTTGAGATATTAAGCGACAGATCCGCATACGGATCTGGAGGAAGCATACAAAGAGATCACGACATGAATTCCTACTTAAAGACTGTGAGAAGCGTGATTCGACAAGAACTTAACCAAATCCGCAAATCAATGCGAGAGAAAAGGCGCAAGGTATGGTGGCCACTCGTACTACCACGACGAGTGGATACCAACATTGTCATGGGGAAGTCTGTGGTGTCGATTAATATCGCTCAACGCCAGGTGCCGTTTTCTGGCATAATGAAGACAGGAAAAGAGTCCTTGAAAAGGTTTAGCAGGCTTATTGCATCTCAACACATGCAGTTGTTTGTGCTGCTTTTTTTCCCTGCTAGGATGTTAATCTTAGGTGCATATAGCTTAATTAGCCTTCGATGA 2118 0.4537 METMCLKTGIVPSISISGSLDTRASPSQVSAVGRSAVDKPSRNSIFSRFSFRYPLESLWPGQRSSVSKNKTFSGLSLDDAVMAENGETESVKDEGEEGSVNGGEGKRENWVLKILHVKSVWKGERGNEREGTEDDENNGGGDEVCDGCAVENDDGEKGEDFEFDRGSFSKMLRRVSLAEARLYAQMSHLGSLAYSIPNIKPGKLLKHYGLRFVTSSLEKKELAAKSEKNPQEVESQEKPEETKESNNGGYRISATAAYNIAASAASYLHAQTKSILPFKSSNTVAGEGSNEGLNMTDAEVASLMATTDSVTAVVAAKEEAKQAVADDLNSTRSSPCEWFICDDNQSGTRFFVIQGSESLASWQANLLFEPIKFEGLDVLVHRGIYEAAKGIYQQMLPEVHAHLKSRGSRANFRFTGHSLGGSLALLVNLMLFIREEVPISSLLPVITFGAPSIMCGGDTLLDKLGLPRSHVQAIIMHRDIVPRAFSCNYPDHVAKILKAINANFRNHPCLNNQKLLYSPMGELLILQPNEKFSPSHQLLPQGSGLYLLCCPLSEPNDTEKKLHAAQLTFLNTPHPLEILSDRSAYGSGGSIQRDHDMNSYLKTVRSVIRQELNQIRKSMREKRRKVWWPLVLPRRVDTNIVMGKSVVSINIAQRQVPFSGIMKTGKESLKRFSRLIASQHMQLFVLLFFPARMLILGAYSLISLR 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05355 705 PANTHER PHOSPHOLIPASE A1 PLIP2, CHLOROPLASTIC 20 694 IPR043367 GO:0008970
Vivi1g05355 705 CDD Lipase_3 332 492 - -
Vivi1g05355 705 MobiDBLite consensus disorder prediction 222 248 - -
Vivi1g05355 705 MobiDBLite consensus disorder prediction 79 104 - -
Vivi1g05355 705 SUPERFAMILY alpha/beta-Hydrolases 334 526 IPR029058 -
Vivi1g05355 705 MobiDBLite consensus disorder prediction 85 104 - -
Vivi1g05355 705 MobiDBLite consensus disorder prediction 124 161 - -
Vivi1g05355 705 MobiDBLite consensus disorder prediction 222 245 - -
Vivi1g05355 705 MobiDBLite consensus disorder prediction 135 149 - -
Vivi1g05355 705 Gene3D alpha/beta hydrolase 293 519 IPR029058 -
Vivi1g05355 705 Pfam Lipase (class 3) 351 488 IPR002921 GO:0006629
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05355 Vivi-Chr1 117137374 117141246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05355 1 705 Acyl Lipid Metabolism Gene Families AT1G02660 55.646 0.0 743
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05355 - - gmx:100807834 994.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g05355 1 117137374 117141246 Vivi1g05355 1 117137374 117141246 ECH
Vivi6g04603 6 148079179 148082448 Vivi1g05355 1 117137374 117141246 PCT