Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05250 ATGGATAGAGTGAAGGATTTGGCATCAAAGAAAGCTGCAGTTGTATTCACAAAGAGTTCATGCTACATGTGTCACAGCATAACACAGCTCTTCTATGAGCTAGGAGCCAGCCCTGCAGTGCATGACCTAGACAATGAACCCTATGGTAGGGAAATGGAAAGGGCTCTAAGGAGCCTTGGATGTAACCCTTCAGTTCCAGCAGTTTTCATTGGTGGAAAATTTGTAGGGTCATCAAAGGATGTGATTTCTCTTCATGTTGATGGTTCTCTCAAACAAATGCTTATGGCTGCTAGAGCCATTTGGTTCTAG 309 0.4369 MDRVKDLASKKAAVVFTKSSCYMCHSITQLFYELGASPAVHDLDNEPYGREMERALRSLGCNPSVPAVFIGGKFVGSSKDVISLHVDGSLKQMLMAARAIWF 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05250 102 CDD GRX_GRXh_1_2_like 12 93 - -
Vivi1g05250 102 NCBIfam glutaredoxin-like family 4 101 IPR011905 -
Vivi1g05250 102 SUPERFAMILY Thioredoxin-like 1 101 IPR036249 -
Vivi1g05250 102 Gene3D Glutaredoxin 1 100 - -
Vivi1g05250 102 PANTHER GLUTAREDOXIN 1 101 IPR011905 -
Vivi1g05250 102 Pfam Glutaredoxin 14 75 IPR002109 -
Vivi1g05250 102 PRINTS Glutaredoxin signature 13 31 IPR014025 -
Vivi1g05250 102 PRINTS Glutaredoxin signature 72 85 IPR014025 -
Vivi1g05250 102 PRINTS Glutaredoxin signature 58 71 IPR014025 -
Vivi1g05250 102 ProSiteProfiles Glutaredoxin domain profile. 1 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05250 Vivi-Chr1 114253199 114253862 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05250 1 102 Miscellaneous Gene Families AT4G15690 46.078 2.28e-33 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05250 K03676 - gmx:100305876 191.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g05250 1 114253199 114253862 Vivi1g05250 1 114253199 114253862 ECH
Vivi6g05476 6 160388399 160389236 Vivi1g05250 1 114253199 114253862 PCT
Vivi1g05250 1 114253199 114253862 Vivi6g05473 6 160357078 160357716 PCT