Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04549 ATGGCTGCAAAGCGCGTGTACCAAGTTTGGAAAGGAAGTAATAAATTCATATTTGGAGGGAGATTGGCATTTGGGCCTGATGCCAGATCCCTAATCATCACTTTTTCGCTGATTATTGTTCCAGTTATCATCTTTTGTGCATTTGTAGCAAGGCATCTTCGGCATGAATTTTCTTCATATTATTCAGGATATGCCATTTTAGTAGCAGCAATTCTCTTTACTATCCATGTTCTGGTGCTCCTCAGTCTTACTTCCGCGCGCGATCCAGGTATTGTTCCAAGGAATTCACATCCACCAGAAGAAGAGTTTCGATATGAGTCTTCTGGGGTAGGCGGACAACAAACGCCAACCCTTCAGTTCCCAAGAACAAAAGAAGTAATGGTCAATGGCATTACTGTAAAGGTGAAATATTGTGAAACTTGTATGCTGTATCGTCCTCCTCGTTGCTCGCATTGCTCCATATGCAACAACTGTGTTGAGCGTTTCGATCATCATTGCCCTTGGGTGGGCCAATGCATTGGACTGAGGAACTACCGATACTTCTTTCTGTTTGTTTCTTCCGCAACGATTCTGTGTGTCTATGTGTTTTCTCTCTCGGCTTATTACATCAAGGTTCTGATGGATAATGATAACAATGGTACAGTGTGGAAGGCGATAAAAGACTCTCCTGCATCCGTGATATTAATGGCGTATTGTTTCATCTCTCTGTGGTTTGTTGGTGGACTAACTGGTTTTCATTTGTACCTTATAGGCTCAAACCAGACAACCTATGAAAATTTCCGGTATAGAGCTGATGGCAGGATCAATGTTTTTAATCGAGGTTGTATAAATAATTTTCTGGAAGTGTTTTGCACAGAAATAAAGCCGTCAAGGAACAATTTCAGGGCTTTTGTTCAAGAGGAGGGGCAAAGGCCGCTGACTCCGGTCTTTGCCCGGGGACATGAACAAGGTGATTTGAGTGGCGATCGTCGTCCTAAAGTTGAACATGATCTAGATATCGGTGAAGATCTATTGAAGATATCACAGCGTAGGAACATTGAAGAGCTCGACGAGGACATTCGGAGTAGAGGGAGCAATGGCGCGCCCCATATTACAGGTGATCCTGATTCCATTTTGTCATCAGATCATCGAGCTACCACAATAAGATCTGATACTAGGCACTCTCGTTGGGAAAGAAGTGGAAGCTGGGAAATTGCACAAGATGACTTCGCCAATTCAAATGTCACAGAAAGCAGAAATCATGTCACATCAAAGGAAATGCGCCAATGA 1269 0.431 MAAKRVYQVWKGSNKFIFGGRLAFGPDARSLIITFSLIIVPVIIFCAFVARHLRHEFSSYYSGYAILVAAILFTIHVLVLLSLTSARDPGIVPRNSHPPEEEFRYESSGVGGQQTPTLQFPRTKEVMVNGITVKVKYCETCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGLRNYRYFFLFVSSATILCVYVFSLSAYYIKVLMDNDNNGTVWKAIKDSPASVILMAYCFISLWFVGGLTGFHLYLIGSNQTTYENFRYRADGRINVFNRGCINNFLEVFCTEIKPSRNNFRAFVQEEGQRPLTPVFARGHEQGDLSGDRRPKVEHDLDIGEDLLKISQRRNIEELDEDIRSRGSNGAPHITGDPDSILSSDHRATTIRSDTRHSRWERSGSWEIAQDDFANSNVTESRNHVTSKEMRQ 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04549 422 Pfam DHHC palmitoyltransferase 135 261 IPR001594 GO:0016409
Vivi1g04549 422 MobiDBLite consensus disorder prediction 403 422 - -
Vivi1g04549 422 MobiDBLite consensus disorder prediction 354 394 - -
Vivi1g04549 422 MobiDBLite consensus disorder prediction 92 114 - -
Vivi1g04549 422 MobiDBLite consensus disorder prediction 379 394 - -
Vivi1g04549 422 PANTHER ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 39 301 - -
Vivi1g04549 422 ProSiteProfiles DHHC domain profile. 136 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04549 Vivi-Chr1 97317043 97319603 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04549 65 286 Lipid Metabolism Gene Families AT4G22750 30.435 1.22e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04549 K16675 - gmx:100820208 724.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g05277 2 176783787 176791816 Vivi1g04549 1 97317043 97319603 PCT