Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04479 ATGTCTCAGGTTGCGGTCACTCGATCCATTCAAACCTCTCTCTTACGCCCCACCTCAGGATCTACACACGACAGGTGTCAAATCTTGTTGAAGCCCGCAACTTTTTCATCCAAAGTCTTCCCTCCACAAGGTAACAAATCCTCCAAGCTTAGTATCAGAAACTGTCACATCAATGCAATAAAATCCGTATCAGCTGAAGTTGTCCCTGTCTCACCTGATGATGATTTAAAGATTGAGGAGGAGTTGCAGAAGTTGCCTGGTATGCCGCAACCTAGTGATGCTTCTGGTGGAATGTGGACTAAGCCAATAGTTAGAAGAAAGACTAAGATTGTTTGTACTATTGGTCCTTCTACTAATACAAAGGAGATGATTTGGAAGCTGGCCGAGGCTGGGATGAACGTTGCTCGTATGAATATGTCGCATGGAGATCATGCTTCGCATAAGAAAGTTATTGATTTGGTAAAAGAGTATAATGCACAATCAAAAGATAATGTAATTGCAATCATGCTTGACACCAAGGGTCCAGAGGTCAGGAGTGGGGATTTACCACAACCAATTTTGTTAAAATCTGGACAGGAGTTTACTTTTACTATCCAGAGTGGTGTTGGAACTGCAGATCGTGTTAGTGTGAACTATGATGATTTTGTCAATGATGTTGAAGCAGGGGACACGCTTCTAGTTGATGGTGGTATGATGTCTTTCTTGGTTAAGTCGAAGACAGCGGATTCTGTGAAATGTGAAGTTATTGATGGAGGAGAACTTGGGTCAAGGCGACATTTGAATGTTAGAGGAAAGAGTGCAACACTACCTTCCATTACTGAGAAGGATTGGGATGACATCAAATTTGGAGTCGATAATGAAGTTGATTTCTACGCCGTTTCTTTTGTTAAAGATGCCGAAGTAGTTCATGAACTGAAGAATTATTTGAAAAGTTGTGGTGCTGATATACATGTAATTGTAAAAATTGAAAGTGCAGACTCTATACCAAACTTGCATTCAATTATTACCGCGTCTGATGGGGCTATGGTTGCAAGAGGAGATCTTGGTGCAGAACTCCCTATTGAGGAGGTTCCGCTTTTGCAGGAAGAGATAATTAGGATATGCCGTAGCATGGGAAAGGCTGTTATTGTGGCAACAAATATGCTCGAAAGCATGATTGTTCACCCGACACCAACCAGAGCAGAGGTATCTGATATTGCAATTGCTGTTCGAGAAGGTTCCGATGGAATAATGCTTTCTGGAGAAACTGCTCACGGAAAGTTTCCAATAAAAGCTGCGAAAGTAATGCATACAGTAGCATTACGGACAGAAGCCTCTTTATCATGTGGGCAAAACCCACCTAATATTGGCCTAGTATTCAAGAACCACATGAGCGAGATGTTTGCATACCATGCAACCATGATGTCTAATACTCTTGGAACGTCGACTGTTGTCTTCACTAGATCAGGCTTCATGGCTATTCTATTGAGCCATTATCGACCTTCTGGCACCATATTTGCTTTTACTGATGAGAAAAGAGTACAACAAAGGCTGGCTTTGTATCAAGGAGTCTGTCCCGTTTACATGCAATTCTCTGAGGATTCTGAAGAGACATTCACAAAAGCCTTGGACTTGTTACAGAAGAATGGATTGGTTAAAGAAGGAGAAGAAGTAGCCCTTGTACAAAGTGGAAGGCAACCCATTTGGAGGTTCCACTCGACTCACAATATCCAGGTCCGAACTGTAGGCAGCACGAATTAA 1740 0.4213 MSQVAVTRSIQTSLLRPTSGSTHDRCQILLKPATFSSKVFPPQGNKSSKLSIRNCHINAIKSVSAEVVPVSPDDDLKIEEELQKLPGMPQPSDASGGMWTKPIVRRKTKIVCTIGPSTNTKEMIWKLAEAGMNVARMNMSHGDHASHKKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLPQPILLKSGQEFTFTIQSGVGTADRVSVNYDDFVNDVEAGDTLLVDGGMMSFLVKSKTADSVKCEVIDGGELGSRRHLNVRGKSATLPSITEKDWDDIKFGVDNEVDFYAVSFVKDAEVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRICRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGSDGIMLSGETAHGKFPIKAAKVMHTVALRTEASLSCGQNPPNIGLVFKNHMSEMFAYHATMMSNTLGTSTVVFTRSGFMAILLSHYRPSGTIFAFTDEKRVQQRLALYQGVCPVYMQFSEDSEETFTKALDLLQKNGLVKEGEEVALVQSGRQPIWRFHSTHNIQVRTVGSTN 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04479 579 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 100 440 IPR015813 GO:0003824
Vivi1g04479 579 PRINTS Pyruvate kinase family signature 164 180 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vivi1g04479 579 PRINTS Pyruvate kinase family signature 395 413 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vivi1g04479 579 PRINTS Pyruvate kinase family signature 318 344 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vivi1g04479 579 PRINTS Pyruvate kinase family signature 370 394 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vivi1g04479 579 PRINTS Pyruvate kinase family signature 345 369 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vivi1g04479 579 PRINTS Pyruvate kinase family signature 414 430 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vivi1g04479 579 PRINTS Pyruvate kinase family signature 288 302 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vivi1g04479 579 Pfam Pyruvate kinase, alpha/beta domain 463 555 IPR015795 -
Vivi1g04479 579 FunFam Pyruvate kinase 271 436 - -
Vivi1g04479 579 FunFam Pyruvate kinase 175 270 - -
Vivi1g04479 579 NCBIfam pyruvate kinase 106 575 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vivi1g04479 579 ProSitePatterns Pyruvate kinase active site signature. 316 328 IPR018209 GO:0004743|GO:0006096
Vivi1g04479 579 SUPERFAMILY PK C-terminal domain-like 425 576 IPR036918 -
Vivi1g04479 579 SUPERFAMILY PK beta-barrel domain-like 175 266 IPR011037 -
Vivi1g04479 579 Gene3D - 108 433 IPR040442 -
Vivi1g04479 579 FunFam Pyruvate kinase 437 556 - -
Vivi1g04479 579 Gene3D - 176 269 IPR015806 GO:0004743|GO:0006096
Vivi1g04479 579 Gene3D - 451 576 IPR036918 -
Vivi1g04479 579 Pfam Pyruvate kinase, barrel domain 106 441 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vivi1g04479 579 PANTHER PYRUVATE KINASE 97 553 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04479 Vivi-Chr1 95364575 95368590 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04479 K00873 - gmx:100818193 983.786
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g04479 1 95364575 95368590 Vivi1g04479 1 95364575 95368590 ECH
Vivi2g05174 2 174338448 174343207 Vivi1g04479 1 95364575 95368590 PCT