Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02601 ATGTACAAAGAAAGAGGCTTCTCTGCCTCCAAATCGGAGGATCGGAAACGAATCAACGATGTTCTCGACAAGCAGCTCGAACGTTCCTCTCCTTCCACTTCTCGTCCCATCAATGGCAAAAACAACAAAGACAGAGACAACAACAACAACAACACCGTCAAGGATCCTCGTTCCGCTTCCGTTTCCAAAACTTCCAATATCTCTGAGGAATCTGAAACAGACAGTGAAGAGTCGGATGTTAGTGGTTCTGATGGAGATGACACATCTTGGATCTCATGGTTCTGCAATCTCAGAGGGAATGAGTTCTTTTGTGAGGTGGATGATGATTACATCCAGGATGACTTTAACCTTTGTGGGTTAAGCAGTCAAGTGCCTTACTATGATTACGCACTTGATTTGATTTTGGATGTTGAATCTTCCCATGGTGATATGTTCACAGAGGAACAAAATGAGTTAATTGAATCGGCAGCAGAGATGCTTTATGGTATGATTCATGCACGATACGTACTGACAAGCAAAGGAATGGCTGCGATGCTTGACAAGTACAAAAACTATGACTTTGGTAGATGCCCAAGAGTTTATTGCTCTGGACAACCCTGCCTTCCAGTTGGTCAGTCAGACATTCCGAGGTCAAGTACCGTGAAAATATATTGTCCTAGGTGTGAAGATCTTTATTATCCTCGGTCCAAGTATCAAGGCAACATTGATGGAGCTTATTTTGGAACAACATTTCCGCACCTTTTCTTGATGACGTATGGACAACTGAAGCCACAGAAGCCAGCTCAGGGCTATGTTCCAAGAGTTTTTGGGTTCAAACTTCACAAGCCATGA 831 0.4332 MYKERGFSASKSEDRKRINDVLDKQLERSSPSTSRPINGKNNKDRDNNNNNTVKDPRSASVSKTSNISEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGMIHARYVLTSKGMAAMLDKYKNYDFGRCPRVYCSGQPCLPVGQSDIPRSSTVKIYCPRCEDLYYPRSKYQGNIDGAYFGTTFPHLFLMTYGQLKPQKPAQGYVPRVFGFKLHKP 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02601 276 SUPERFAMILY Casein kinase II beta subunit 87 275 IPR035991 GO:0005956|GO:0019887
Vivi1g02601 276 Gene3D - 187 261 - -
Vivi1g02601 276 FunFam Casein kinase II subunit beta 82 186 - -
Vivi1g02601 276 Pfam Casein kinase II regulatory subunit 89 272 IPR000704 GO:0005956|GO:0019887
Vivi1g02601 276 MobiDBLite consensus disorder prediction 1 24 - -
Vivi1g02601 276 MobiDBLite consensus disorder prediction 1 85 - -
Vivi1g02601 276 ProSitePatterns Casein kinase II regulatory subunit signature. 190 221 IPR000704 GO:0005956|GO:0019887
Vivi1g02601 276 FunFam Casein kinase II subunit beta 187 261 - -
Vivi1g02601 276 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 82 186 IPR016149 GO:0005956|GO:0019887
Vivi1g02601 276 MobiDBLite consensus disorder prediction 52 68 - -
Vivi1g02601 276 PRINTS Casein kinase II regulatory subunit family signature 106 120 IPR000704 GO:0005956|GO:0019887
Vivi1g02601 276 PRINTS Casein kinase II regulatory subunit family signature 236 253 IPR000704 GO:0005956|GO:0019887
Vivi1g02601 276 PRINTS Casein kinase II regulatory subunit family signature 89 105 IPR000704 GO:0005956|GO:0019887
Vivi1g02601 276 PRINTS Casein kinase II regulatory subunit family signature 161 182 IPR000704 GO:0005956|GO:0019887
Vivi1g02601 276 PRINTS Casein kinase II regulatory subunit family signature 186 207 IPR000704 GO:0005956|GO:0019887
Vivi1g02601 276 PRINTS Casein kinase II regulatory subunit family signature 208 229 IPR000704 GO:0005956|GO:0019887
Vivi1g02601 276 PANTHER CASEIN KINASE II SUBUNIT BETA 68 275 IPR000704 GO:0005956|GO:0019887
Vivi1g02601 276 SMART CK_II_beta_2 89 272 IPR000704 GO:0005956|GO:0019887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02601 Vivi-Chr1 54713125 54716191 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02601 K03115 - gmx:100793573 469.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02601 1 54713125 54716191 Vivi1g02601 1 54713125 54716191 ECH
Vivi2g03632 2 145585711 145589257 Vivi1g02601 1 54713125 54716191 PCT