Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02600 ATGTACAAAGAAAGAGGCTTCTCTGCCTCCAAATCGGAGGATCGGAAACGAATCAACGATGTTCTCGACAAGCAGCTCGAACGTTCCTCTCCTTCCACTTCTCGTCCCATCAATGGCAAAAACAACAAAGACAGAGACAACAACAACAACAACACCGTCAAGGATCCTCGTTCCGCTTCCGTTTCCAAAACTTCCAATATCTCTGAGGAATCTGAAACAGACAGTGAAGAGTCGGATGTTAGTGGTTCTGATGGAGATGACACATCTTGGATCTCATGGTTCTGCAATCTCAGAGGGAATGAGTTCTTTTGTGAGGTGGATGATGATTACATCCAGGATGACTTTAACCTTTGTGGGTTAAGCAGTCAAGTGCCTTACTATGATTACGCACTTGATTTGATTTTGGATGTTGAATCTTCCCATGAGGAACAAAATGAGTTAATTGAATCGGCAGCAGAGATGCTTTATGGTATGATTCATGCACGATACGTACTGACAAGCAAAGGAATGGCTGCGATGCTTGACAAGTACAAAAACTATGACTTTGGTAGATGCCCAAGAGTTTATTGCTCTGGACAACCCTGCCTTCCAGTTGGTCAGTCAGACATTCCGAGGTCAAGTACCGTGAAAATATATTGTCCTAGGTGTGAAGATCTTTATTATCCTCGGTCCAAGTATCAAGGCAACATTGATGGAGCTTATTTTGGAACAACATTTCCGCACCTTTTCTTGATGACGTATGGACAACTGAAGCCACAGAAGCCAGCTCAGGGCTATGTTCCAAGAGTTTTTGGGTTCAAACTTCACAAGCCATGA 816 0.4338 MYKERGFSASKSEDRKRINDVLDKQLERSSPSTSRPINGKNNKDRDNNNNNTVKDPRSASVSKTSNISEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHEEQNELIESAAEMLYGMIHARYVLTSKGMAAMLDKYKNYDFGRCPRVYCSGQPCLPVGQSDIPRSSTVKIYCPRCEDLYYPRSKYQGNIDGAYFGTTFPHLFLMTYGQLKPQKPAQGYVPRVFGFKLHKP 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02600 271 Gene3D - 182 256 - -
Vivi1g02600 271 FunFam Casein kinase II subunit beta 182 256 - -
Vivi1g02600 271 SUPERFAMILY Casein kinase II beta subunit 87 270 IPR035991 GO:0005956|GO:0019887
Vivi1g02600 271 SMART CK_II_beta_2 89 267 IPR000704 GO:0005956|GO:0019887
Vivi1g02600 271 Pfam Casein kinase II regulatory subunit 89 267 IPR000704 GO:0005956|GO:0019887
Vivi1g02600 271 MobiDBLite consensus disorder prediction 1 24 - -
Vivi1g02600 271 MobiDBLite consensus disorder prediction 1 85 - -
Vivi1g02600 271 ProSitePatterns Casein kinase II regulatory subunit signature. 185 216 IPR000704 GO:0005956|GO:0019887
Vivi1g02600 271 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 82 181 IPR016149 GO:0005956|GO:0019887
Vivi1g02600 271 FunFam Casein kinase II subunit beta 82 181 - -
Vivi1g02600 271 PRINTS Casein kinase II regulatory subunit family signature 89 105 IPR000704 GO:0005956|GO:0019887
Vivi1g02600 271 PRINTS Casein kinase II regulatory subunit family signature 231 248 IPR000704 GO:0005956|GO:0019887
Vivi1g02600 271 PRINTS Casein kinase II regulatory subunit family signature 106 120 IPR000704 GO:0005956|GO:0019887
Vivi1g02600 271 PRINTS Casein kinase II regulatory subunit family signature 181 202 IPR000704 GO:0005956|GO:0019887
Vivi1g02600 271 PRINTS Casein kinase II regulatory subunit family signature 203 224 IPR000704 GO:0005956|GO:0019887
Vivi1g02600 271 PRINTS Casein kinase II regulatory subunit family signature 156 177 IPR000704 GO:0005956|GO:0019887
Vivi1g02600 271 MobiDBLite consensus disorder prediction 52 68 - -
Vivi1g02600 271 PANTHER CASEIN KINASE II SUBUNIT BETA 68 270 IPR000704 GO:0005956|GO:0019887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02600 Vivi-Chr1 54713124 54716191 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02600 K03115 - gmx:100793573 452.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02600 1 54713124 54716191 Vivi2g03632 2 145585711 145589257 PCT