Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02196 ATGCAAGACTCAATTGGTGTTCCTGCTTGCTTTTCCACTGCGGAGAAGCTTGGCGATGATCATGGCGCAGGCGTGACACGTTCTGGTCAGAGTGTTTACATGTCAGTATACAGAACAAAGGTAGCTGATCACTGCCGTTTGATAACCATCACATGGTGCAAGAATCTTTTACTTCACGGGCTTTCGATATCGGTAGAAGGTCCAGAAGGAGAAGCTCAATATTCCTGCAAGGTTGAACTAAAGCCATGGTATTTTTGGAGGAAACAAGGCTCCAAAAGGTTTGTAGTAGATGGTAATAAAGCTGTTGATATTTTCTGGGACCTTAAAGCTGCTAAATTCAACGGCGAAACAGAACCAACTTCGGAGTACTATGTAGCTGTTGTTTGTGATGAAGAGGTTGTTCTTCTTCTAGGTGATCTTAAAAAAGATGCTTATAGAAGAACCGGGTGTAGACCAGCACTTATTGATCCGATATTGGTTTCGAAAAAAGAACATATTTTTGGAAAGAAGAGATTCTCAACTAGAGCTAAGTTTCATGAGAAGGGTAAGTGGCATGAGATTTCAATTGAATGCAAAAACCGAGGAAATGGAAATGGAGATTCTGTTGTTGTTGGATCAGTTCAGCCAGAGATGGAGATAAGAATCGATGAACATTTGGTGATTCATGTGAAGCATTTGCAGTGGAAGTTTAGAGGTAATGAATCAGTTCATCTTAGTAAAATGAGAATTGAAGTTTATTGGGATGTTCATGATTGGTTATTTAGTCCTGGTTTAAAACATGCTTTGTTTATTTTTAAGCCAATTTTATCATCTACTATTTCATCTTGTTCATCTTCTCCACTGTCAATTCAAGCTAGAAGTGTTGAATCTGTGGAAGGGTTTAGTGTGAGTGGTTCATCAGAGTTTTCTTTGTTTCTTTATGCTTGGAAAGTTGAATGA 939 0.3876 MQDSIGVPACFSTAEKLGDDHGAGVTRSGQSVYMSVYRTKVADHCRLITITWCKNLLLHGLSISVEGPEGEAQYSCKVELKPWYFWRKQGSKRFVVDGNKAVDIFWDLKAAKFNGETEPTSEYYVAVVCDEEVVLLLGDLKKDAYRRTGCRPALIDPILVSKKEHIFGKKRFSTRAKFHEKGKWHEISIECKNRGNGNGDSVVVGSVQPEMEIRIDEHLVIHVKHLQWKFRGNESVHLSKMRIEVYWDVHDWLFSPGLKHALFIFKPILSSTISSCSSSPLSIQARSVESVEGFSVSGSSEFSLFLYAWKVE 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02196 312 PANTHER EXPRESSED PROTEIN 8 310 IPR008586 -
Vivi1g02196 312 Pfam Plant protein of unknown function (DUF868) 28 310 IPR008586 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02196 Vivi-Chr1 46137752 46139386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02196 27 312 EF-hand Containing Proteins AT5G28150 39.024 1.08e-66 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02196 - - lja:Lj4g3v1415290.1 539.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02196 1 46137752 46139386 Vivi1g02196 1 46137752 46139386 ECH
Vivi1g02196 1 46137752 46139386 Vivi3g03972 3 68930138 68931840 PCT