Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01818 ATGCGACGACGGGCTGCCGATTATCGGCGCCCGGTTAGACGGAGGTTATCGTATTGGATCTGCCTTCTTCTCGCTTTCTCCTTCATTCTCGCTACCGTTTTGTTCGTCATTCAACATAATCATCATCAAGATCCGCTTCAATATTCTTTGCTCGAGAGAAATGCAAGAGTTGAACATTTTGCCAAAGAGAGTTTGAATTTTACTGAAGAGATTTTAAGTGTAACATCATTTTCTCGGCAGTTAGCGCAACAAATGATTCTGGCTAAGGCTTATGTGGTTATTGCCAAAGAACACAATAATCTTCACCTTGCCTGGCAGCTTAGCTCAAAGATCAGAAAATGCCAACTTTTGCTTTCAAAAGCTGCCATGACTGGGGAGCCTGTCACACTGGAAGAAGCAGAGCCGATTATTAAAAGTCTTACTGCTCTAATTTTTAAGGCACAAGATATCCATTATGACATTGCAACTACAATAGTGACTATGAAATCTCATATTCAAGCTCTTGAAGAGCGTGCCAATGCAGCAACAGTTCAAAGCGCTGTGTTTGGTCAACTTGCAGCTGAAGCACTACCCAAGAATCTACATTGCCTGAATGTGAAACTCGTGACTGATTGGCTCAAGGTGCCAGCCCTACAGAAACTTGCAAATGAGAGGAAAAACTCCCCGAGGCTCACGGACAACAATCTATATCATTTCTGCTTATTTTCAGATAATGTACTGGCAACATCTGTAGTTATTAATTCAACCGTCTACAATGCTGATCATCCGAAGCAATTGGTCTTTCACATTGTCACCAATGGAATCAATTACGGAGCAATGCAAGCATGGTTCCTTAGTAGTGACTTCAAAGGAGCCACTGTAGAGGTACAGAATATTGAGGAGTTCCGGTGGTTGAATGCATCATATTCTCCAGTTGTCAAACAGCTCCAAAATCCTGACTCGCGAACCTTCTACTTTGGGCTATATCAAGATGTAAACGCTGAACCAAAAATTCGGAATCCCAAGTATTTATATTTATTGAATCATCTTCGGTTTTATATCCCCGAGATTTATCCACAACTTGAGAAGGTTGTTTTTCTGGATGATGATCTTGTTGTCCAGAAAGATCTGACCCCTCTTTTCTCACTGGATTTGCATGGGAATGTAAATGGTGCAGTTGAAACTTGTCTTGAAGCATTTCATCGGTACTACAAGTATCTCAACTTCTCAAGTTCCATTATAAGCTCGAGATTTGATCCACAGGCATGCGCGTGGGCATTTGGTATGAACGTTTTTGACTTGGTGGCTTGGAGGAAGAATAACGTGACTGCAAGATATCATTATTGGCAGGAGCAGAATGCCGATAGGACACTCTGGAAGTTGGGCACACTTCCTCCCGCTCTTCTGAGTTTTTATGGTTTGACAGAGCCACTTGACAGAAGATGGCATGTTTTAGGTTTGGGTTATGACCTAAATATTGACAACCGCCTTATTGAAAGTGCTGCAGTTATTCACTTCAATGGGAACATGAAGCCATGGCTGAAGGTAGCTATAGGCAGGTATAAGCCACTGTGGGACAAGTACATAAATCAAAGTCTCCCTCATCTTCAAAATTGTGTACTGAGTTGA 1608 0.4198 MRRRAADYRRPVRRRLSYWICLLLAFSFILATVLFVIQHNHHQDPLQYSLLERNARVEHFAKESLNFTEEILSVTSFSRQLAQQMILAKAYVVIAKEHNNLHLAWQLSSKIRKCQLLLSKAAMTGEPVTLEEAEPIIKSLTALIFKAQDIHYDIATTIVTMKSHIQALEERANAATVQSAVFGQLAAEALPKNLHCLNVKLVTDWLKVPALQKLANERKNSPRLTDNNLYHFCLFSDNVLATSVVINSTVYNADHPKQLVFHIVTNGINYGAMQAWFLSSDFKGATVEVQNIEEFRWLNASYSPVVKQLQNPDSRTFYFGLYQDVNAEPKIRNPKYLYLLNHLRFYIPEIYPQLEKVVFLDDDLVVQKDLTPLFSLDLHGNVNGAVETCLEAFHRYYKYLNFSSSIISSRFDPQACAWAFGMNVFDLVAWRKNNVTARYHYWQEQNADRTLWKLGTLPPALLSFYGLTEPLDRRWHVLGLGYDLNIDNRLIESAAVIHFNGNMKPWLKVAIGRYKPLWDKYINQSLPHLQNCVLS 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01818 535 SUPERFAMILY Nucleotide-diphospho-sugar transferases 230 533 IPR029044 -
Vivi1g01818 535 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 231 531 IPR029044 -
Vivi1g01818 535 FunFam Hexosyltransferase 232 528 - -
Vivi1g01818 535 CDD GT8_like_1 230 523 - -
Vivi1g01818 535 Pfam Glycosyl transferase family 8 233 508 IPR002495 GO:0016757
Vivi1g01818 535 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 62 533 IPR029993 GO:0047262
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01818 Vivi-Chr1 38861905 38864958 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01818 1 532 Glycosyltransferase AT2G20810 55.866 0.0 600
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01818 K13648 - gmx:100798878 970.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01818 1 38861905 38864958 Vivi1g01818 1 38861905 38864958 ECH
Vivi1g01818 1 38861905 38864958 Vivi4g01747 4 78165003 78168023 PCT