Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01404 ATGGAGTCTTTTTGCAAATTCAAATTATGGGTCATGGTTTTCTGTTTAGTGTTTCAATCAGGGTTTGGGTTCTACCTTCCGGGTAGTTACCCTCATAATTATGCTGTTGGTGATGAGTTGTCTGTGAAGGTGAATTCTATTACTTCAATTGGTACTGAGATGCCGTTTAGTTATTATAGTTTACCCTTTTGTAAGCCTCAAGGTGGTGTTAAGGACAGTGCTGAGAATCTCGGTGAACTCCTCATGGGGGACCGGATCGAGAATTCACCGTATAGGTTTAAGATGTATACGAATGAGTCTGAGGTTTTTTTGTGTCAAGTTGATAAGTTGTCTGGAGATCAGTTCAAGATCTTGAAAGAGAGGATTGATGAGATGTATCAGGTTAATCTTATACTTGATAATTTGCCGGCTATTCGGTTTACGAAGAAAGATGAGTATTTTTTGAGATGGACTGGGTATCCGGTTGGGATTAAGATTCAGGATGTGTATTATTTGTTTAACCATCTTAGGTTTAATGTTCTTGTGCATAAGTATGAGGAGACTAATGTGGCTCGTGTTATGGGGACGGGTGATGCGGCTGAGATGATTCCTCCTGTTGGTAAGGAGGGGTCGGATAAGCCGGGTTATATGGTTGTTGGGTTTGAGGTTGTTCCTTGTAGCATTTTGCATAATGCTAATTCGGCTAAAAACTTGAAGATGCATGAGAAGTACCCGTCGCCTATTAAATGTGATCCGTCTACTGTGGCAATGCCGATTAAAGAAGGCCAGCCGATTGCGTTTACCTATGAGGTGACCTTTGAGGAGAGTGATATCAAGTGGCCGTCTAGATGGGATGCTTATTTGAAGATGGAGGGAGCCAAAGTTCATTGGTTCTCGATTCTCAATTCGTTGATGGTGATCACTTTTCTTGCTGGTATTGTTCTTGTTATCTTTTTGAGAACCGTTAGGAGAGATCTGGCTAGTTATGAGGAGCTTGATAAGGAAGCTCAAGCTCAGATGAATGAGGAGTTATCTGGTTGGAAGCTTGTTGTGGGGGATGTTTTCCGCGCTCCATCGAATCCTGCTTTGTTGTGTATAATGGTTGGTGACGGAGTTCAGATTCTAGGGATGGCTATTGTGACAATATTGTTTGCTGCACTTGGATTTATGTCACCGGCCTCTCGCGGAACACTTATCACAGGTATGCTGTTTTTCTACATGATACTTGGTATTGCTGCTGGTTATGTTGCAGTTCGACTATGGAGAACACTCGGAAGCGGTGACCAGAAGGGTTGGATTTCAGTTGCATGGAAAGCTGCCTGTTTCTTCCCTGGTATTGCCTTTTTGATCCTCACAGTCTTAAACTTCCTATTATGGGGAAGCCACAGTACCGGAGCCATTCCATTTTCACTCTTTGTTATATTGCTTTTGCTTTGGTTCTGCATTTCTGTCCCACTTACACTTGTCGGTGGTTACTTCGGAGCAAAAGCACCCCACCTCGAATATCCCGTCAGAACCAACCAAATCCCTAGAGAAGTTCCTCAACAACGGTACCCTTCATGGCTTTTAGTTCTAGGTGCCGGCACCCTTCCATTCGGAACCCTTTTCATCGAGCTCTTCTTCATCATGTCCAGCATTTGGATGGGTCGCGTGTACTACGTTTTCGGCTTTCTCTTCATTGTTTTGATCCTACTCGTGGTGGTTTGTGCCGAGGTATCTCTTGTTCTAACTTACATGCACCTCTGCGTGGAGGATTGGAGATGGTGGTGGAAATCGTTCTTCGCCTCTGGTTCTGTCGCATTGTACATCTTTTTGTATTCCATAAACTATCTCGTATTCGACCTCAAGAATCTGAGTGGACCTGTTTCCGCAACACTTTATCTTGGATATTCACTCTTCATGGTTCTAGCAATCATGTTGGTGACAGGCACAGTTGGATTCCTCTCTTCATTCTGGTTTGTGTATTACCTGTTCTCTTCTGTGAAATTGGATTGA 1974 0.4336 MESFCKFKLWVMVFCLVFQSGFGFYLPGSYPHNYAVGDELSVKVNSITSIGTEMPFSYYSLPFCKPQGGVKDSAENLGELLMGDRIENSPYRFKMYTNESEVFLCQVDKLSGDQFKILKERIDEMYQVNLILDNLPAIRFTKKDEYFLRWTGYPVGIKIQDVYYLFNHLRFNVLVHKYEETNVARVMGTGDAAEMIPPVGKEGSDKPGYMVVGFEVVPCSILHNANSAKNLKMHEKYPSPIKCDPSTVAMPIKEGQPIAFTYEVTFEESDIKWPSRWDAYLKMEGAKVHWFSILNSLMVITFLAGIVLVIFLRTVRRDLASYEELDKEAQAQMNEELSGWKLVVGDVFRAPSNPALLCIMVGDGVQILGMAIVTILFAALGFMSPASRGTLITGMLFFYMILGIAAGYVAVRLWRTLGSGDQKGWISVAWKAACFFPGIAFLILTVLNFLLWGSHSTGAIPFSLFVILLLLWFCISVPLTLVGGYFGAKAPHLEYPVRTNQIPREVPQQRYPSWLLVLGAGTLPFGTLFIELFFIMSSIWMGRVYYVFGFLFIVLILLVVVCAEVSLVLTYMHLCVEDWRWWWKSFFASGSVALYIFLYSINYLVFDLKNLSGPVSATLYLGYSLFMVLAIMLVTGTVGFLSSFWFVYYLFSSVKLD 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01404 657 PANTHER TRANSMEMBRANE 9 SUPERFAMILY PROTEIN 23 657 IPR004240 GO:0016020
Vivi1g01404 657 Pfam Endomembrane protein 70 55 609 IPR004240 GO:0016020
Vivi1g01404 657 Coils Coil 312 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01404 Vivi-Chr1 29242724 29245239 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01404 1 657 Miscellaneous Gene Families AT5G35160 85.106 0.0 1150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01404 K17086 - gmx:100802084 1251.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01404 1 29242724 29245239 Vivi1g01404 1 29242724 29245239 ECH
Vivi1g00214 1 4197666 4199012 Vivi1g01404 1 29242724 29245239 PCT
Vivi1g01404 1 29242724 29245239 Vivi4g01437 4 53255209 53257981 PCT