Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00214 ATGTTCTTATCCATTCATTCATCTCAAACAATGAGTTTCCACTCAATCTCATTACTACTAACAATACTTCAACTCACACTAACAAATTCTCAATCCACACTTTGTAGAACTTCATGTGGTTCCATTCCAATTCAATATCCTTTTTCCATTGATGATGGTTGTGGAAGTCCTTATTACAGATACATTCTCTCTTGTTCTCAATCTTCTGATCATTCACATAGCCTTCAACTAAGAACACCTTCTGGTAGTTACCTTGTTCATCACGTTAGCTATATTGATCCACACATTGTTGTCACTGATCCATTCATGTGGAACTGTGAAGACGGTGAAAGTTATCGTCCCACGAGACCGTTTAGTTTGGACACAAGCACGCGGTTCAAGCTTTCGCCTCAAAATCAGTATCTTTTCTTCAATTGTAGTGAAGAGAAAGTTATTGTTAAGCCAAAGCCTGTGTTTTGTGAAAAGTTTCCTGAACACTGTGATTCTTCTTGTGACAGTGCTAGTTATCTTTGCAGGCATTTGCCAATGTGTTCTTTTGCTATGAGTGGTAGTTCTTGTTGTTCTTATTATCCTAAAGCTAGTGAATCTTTGAGGTTGATGCTTATGTATTGCTCAAGTTATGCTAGTGTTTATTGGAGAAATGTTGGTGCTCCTCAACCTTATGATCAAGCTCCTGAATATGGGATTAGAGTTGATTTTGATGTTCCGGTTACAACGCGGTGTTTACAATGTCAGGATCAATCTAAAGGTGGTGGTGGAACTTGTGGATTTGATACACAAACTCAGAGTTTCATGTGTTTATGTAAGGAAGGAAATTTCACCACTCATTGCAATGATTATGATAGTGCAAGGCACAATAGGAATGTCCATGTAATTGCAGGGACAGTTACTGGTATTTCGGCTTTCGGAGCAGTTGGAATTGGAGGTTTTATTTGGTACATAAAGAAAGTGAGAGCTAAAGCACCAGTAACATGTGGAGTTCAAACCAATGAAAACAGGCTTTTCTAG 1008 0.3829 MFLSIHSSQTMSFHSISLLLTILQLTLTNSQSTLCRTSCGSIPIQYPFSIDDGCGSPYYRYILSCSQSSDHSHSLQLRTPSGSYLVHHVSYIDPHIVVTDPFMWNCEDGESYRPTRPFSLDTSTRFKLSPQNQYLFFNCSEEKVIVKPKPVFCEKFPEHCDSSCDSASYLCRHLPMCSFAMSGSSCCSYYPKASESLRLMLMYCSSYASVYWRNVGAPQPYDQAPEYGIRVDFDVPVTTRCLQCQDQSKGGGGTCGFDTQTQSFMCLCKEGNFTTHCNDYDSARHNRNVHVIAGTVTGISAFGAVGIGGFIWYIKKVRAKAPVTCGVQTNENRLF 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00214 335 Pfam Wall-associated receptor kinase galacturonan-binding 35 99 IPR025287 GO:0030247
Vivi1g00214 335 PANTHER WALL-ASSOCIATED RECEPTOR KINASE CARBOXY-TERMINAL PROTEIN-RELATED 13 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00214 Vivi-Chr1 4197666 4199012 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00214 - - tpra:123908930 601.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00214 1 4197666 4199012 Vivi1g00214 1 4197666 4199012 ECH
Vivi1g00214 1 4197666 4199012 Vivi1g01404 1 29242724 29245239 PCT