Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01153 ATGGCTATCATAACAACCATCACCGGCAAACGCCCCCACCGGTGGCTTAATCACAACCGTTCATCTCCGAATTCTTCAGAATTCAAAAGACAGAAAGTATCAACCATGTCTCACAACAAGCCACCACCATTACCCACCGCCACAACCAATCCCACTGTTTCCAGAATTTCTCGTTACCCTGAAACCAAACCACCTCTGCTTAGAGAAGTTCACGCGCCCTGCAGCAGACCGCGCAAATTCGATTTATCAAACAATCCCAAACTAGAATCGTCGAACTTGGTGGTTAGTGGTATCAGCCACTCCTTATTTGAAAATTACCACCGTGCGAAATGTTCTGCAATGGCCACCATTCCGTTGCAGATAAAGGGAAAAGAAAAGGATAATCATAAGGAAGTTGTTTCGGAAGATTCAAATGTTGAAGATGTACTGCCTGTCGAGAATGATTTGGTTTGTTTGGATACTGAGGCGGTGAACGGTGGCGTTCAGAAACAGTCAACTTCATCTGTGGTTTCTGAGTTGAGTAATGATAAATTGAATGTGGTTGATGATGCTGCGAAGATTTTGGATACTTTGTCTTTAGAGCCGGAGAAGGATGTTTCGAGTGTTCGTGCTTACAAGAAGTTGCTTCAGGCGGTTGATAAGCGAACAGATACGATTGGTAGGTTGAAATTTGAAATTCAGCTAAATGAGAAGCGCAGATCCGCATTTGATTTGTTGCGTCCAAAGAAAGGACTAGTAGAGGAAGTGCCACTGGAACCTTTTGTTCCTCTTACAAAAGAGGAAAAAGCTGAGGTTGCACGAGCCTTTTCTGCCAATAGGAAGAAGATCTTGGTTGCTCATGAGAATTCCAATATTGAAATATCGGGCGAAAAGTTTCAGTGTCTTAGGCCAAGTGGATGGTTAAACGATGAGGTGATCAATTTGTACCTTGAGTTATTGAAAGAGAGGGAGAGAAGAGAGCCACAGAAGTTTCTGAATTGTCATTTTTTCAATACCTTTTTCTATAAGAAGTTAATAAGTGGCAAAAATTGTTATGATTACAAATCTGTGAAGAGATGGACTACTCAGAAGAAATTGGGATATGGTCTACATGAATGTGATAAAATATTTGTACCTATTCACCAGAATATCCATTGGTGCTTAGGTGTTATCAATAAGAAGGAAAAGAAGTTTCAGTATCTTGATTCACTGAAAGGAATTGATACTCAAGTGCTGGAAGTGCTGGCAAGATATTTTGTAGATGAAGTAAAGGACAAGACTGGAGAAGATATTGACATAAGTAATTGGGAAAAAGAATTTGTTGAAGAGCTTCCTGAACAGAAGAATGGGTCTGATTGCGGGGTATTTATGGTCAAGTATGCTGACTTTTATAGCAGAAACTTGAGGCTGTGTTTCAATCAGGAACATATGCCTTATTTCAGGCTTAAAACAGCTAAGGAAATTTTGAAATTGAAAGCTGAATAA 1464 0.4016 MAIITTITGKRPHRWLNHNRSSPNSSEFKRQKVSTMSHNKPPPLPTATTNPTVSRISRYPETKPPLLREVHAPCSRPRKFDLSNNPKLESSNLVVSGISHSLFENYHRAKCSAMATIPLQIKGKEKDNHKEVVSEDSNVEDVLPVENDLVCLDTEAVNGGVQKQSTSSVVSELSNDKLNVVDDAAKILDTLSLEPEKDVSSVRAYKKLLQAVDKRTDTIGRLKFEIQLNEKRRSAFDLLRPKKGLVEEVPLEPFVPLTKEEKAEVARAFSANRKKILVAHENSNIEISGEKFQCLRPSGWLNDEVINLYLELLKERERREPQKFLNCHFFNTFFYKKLISGKNCYDYKSVKRWTTQKKLGYGLHECDKIFVPIHQNIHWCLGVINKKEKKFQYLDSLKGIDTQVLEVLARYFVDEVKDKTGEDIDISNWEKEFVEELPEQKNGSDCGVFMVKYADFYSRNLRLCFNQEHMPYFRLKTAKEILKLKAE 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01153 487 ProSiteProfiles Ubiquitin-like protease family profile. 285 457 IPR003653 GO:0006508|GO:0008234
Vivi1g01153 487 Gene3D Adenoviral Proteinase; Chain A 246 485 - -
Vivi1g01153 487 MobiDBLite consensus disorder prediction 18 57 - -
Vivi1g01153 487 PANTHER SENTRIN/SUMO-SPECIFIC PROTEASE 87 480 - -
Vivi1g01153 487 SUPERFAMILY Cysteine proteinases 253 485 IPR038765 -
Vivi1g01153 487 MobiDBLite consensus disorder prediction 1 60 - -
Vivi1g01153 487 Pfam Ulp1 protease family, C-terminal catalytic domain 300 481 IPR003653 GO:0006508|GO:0008234
Vivi1g01153 487 FunFam Ubiquitin-like-specific protease ESD4 244 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01153 Vivi-Chr1 24316697 24325329 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01153 K08592 - gmx:100797013 607.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01153 1 24316697 24325329 Vivi1g01153 1 24316697 24325329 ECH
Vivi1g01153 1 24316697 24325329 Vivi4g02707 4 129119877 129126371 PCT