Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00947 ATGACCCATTTCATTAATTTTGTTATGAAAGTTAAGCAATTTCTCTATCTGCAGAAGCACCTATATTTATGTCAAGGCTTAATGAAAATGAAGAAGTGGTATGGAGGCCTGTTGATCATGGCTTTGTGTGTGATGCTGTTTCTACTGTACAGTCTCAATGGAATTCCGCCACAAAAACAGTCAACAAAACAGTCGGCATACAGTTTTTTCAATAACAATTCACCACCAAACGATTCTATTAAAGGAAGCAGCAATGTTGAAGCTGCCTCTTTCAATGCGGAACTGAAAAGGATAGCAAAACCAACAAAAAGGCCACATTTGGTACATGTCGCGGGGCTTGATGATCTGTATGATACAAAAAATTTATCCGAAGGAGAGATGAATGTTGTACTTGCTTGGACACATTTACGCTCCTTGCTATCGAGGTCAGATGCTTTGCCGGAAATGGCTCAAGGAGTCAAAGAGGCTTCTGTAGCATGGAAAGAATTGCTGGCCACCGTTGAAAATGACAAAGCGTCTAAGATTAGTAAGATAGACAGCCCAGAAAATCAAAACTGTCCATTCTCTGTGACCACACTTGGCAAGACAGTAGAAGATAGTGGAATCACTCTGAATCTTCCTTGTGGTTTGATCATAGACTCTTCTATTACATTAATTGGCATCCCTAATGAACAAAACAGTAGCTTTCAGATTGACCTAACTGGACAAGAACTAGAAGAGGAGCCACATCCTCCAATTATCTTGCATTATAATGTGAGTCTTCCAGGCGAAAACATGACAGAGGAGCCGTATATTGTTCAAAATACATGGACCAATGATTTCGGGTGGGGAAAAGAGGAAAGGTGTCCTGCTCGTGGTTCCGCTAACATCCACAATGTTGATGAGCTTGTTCCATGCAATGTACAAGCAGTCAGAAATAACTACGAAGAGAACGTAAATGTCGGTCAACCTACTAGTGATATACCTTCTAATATTTCCTCAGAAAGTGCACATAGAACTGGTAATTTCCCTTTTTCTGAGGGTAATCCTTTCACTGCCACATTGTGGGTTGGTTCAGAGGGATTTCATATGACTGTGAATGGAAGGCATGAAACATCTTTTGCATATAGGGAGAAGCTTGAACCATGGTTAGTCAGCACCATAAAAGTCGCAGGAAGTTTAAGTCTCTTCTCGGTTCTTGCTAAAGGTTTACCCGTTACTGAAGGTAATGATTTAGCTGTTGATGTTGAGAACCTGAAGGCTCCTTCTATTCTTAGAAAAAGGCATTTTTTGTTGATCGGAGTATTCTCTACCGGAAATAACTTTGAGCGTCGAATGGCTCTGAGGAGGTCTTGGATGCAATATGAGGCTGTACGTTCTGGTGAAGTTGTTGTCAGATTTTTCATTGGACTTCATAAGAACAATAGAGTTAATTTGGAGTTATGGAGAGAAGCTCAAGCATATGGAGATATCCAATTAATGCCTTTTGTGGATTATTACAGTTTGATATCTTTAAAGACAATCGCTATTTGTATTGTGGGGACAAAAATCATCCCTTCTAAATATATCATGAAAACAGACGATGATGCTTTCGTAAGGGTTGACGAAATGCTTTCCAGCCTTAGAGGGAAGTCGCCTGACGGCCTCTTGTACGGTCTGATATCTTCTAAATCATCTCCTGATAGGGATAAGGACAGCAAGTGGTACATCAGTGACAACGAATGGCCATATGATACATACCCACCATGGGCACATGGTCCTGGCTATGTTATCTCTCGCGACATAGCAAAATTTGTCGTCTTTGGCCACCAGGAAAGAAAACTCCAGTTCTTTAAATTAGAAGATGTTGCCATGGGAATATGGATTGAACAATTTCGGAATAGTGGTAAAGAAGTGCATTATGAGAATGATGAGAGGTTTTACAATGCTGGATGTGATTCAAATTATATACTTGCACATTATCAAAGCCCAAGGATGGTGCTATGCCTTTGGGAGAAACTGCAGAAAGAACACAAGCCAGAATGTTGTGAGTAG 2013 0.4044 MTHFINFVMKVKQFLYLQKHLYLCQGLMKMKKWYGGLLIMALCVMLFLLYSLNGIPPQKQSTKQSAYSFFNNNSPPNDSIKGSSNVEAASFNAELKRIAKPTKRPHLVHVAGLDDLYDTKNLSEGEMNVVLAWTHLRSLLSRSDALPEMAQGVKEASVAWKELLATVENDKASKISKIDSPENQNCPFSVTTLGKTVEDSGITLNLPCGLIIDSSITLIGIPNEQNSSFQIDLTGQELEEEPHPPIILHYNVSLPGENMTEEPYIVQNTWTNDFGWGKEERCPARGSANIHNVDELVPCNVQAVRNNYEENVNVGQPTSDIPSNISSESAHRTGNFPFSEGNPFTATLWVGSEGFHMTVNGRHETSFAYREKLEPWLVSTIKVAGSLSLFSVLAKGLPVTEGNDLAVDVENLKAPSILRKRHFLLIGVFSTGNNFERRMALRRSWMQYEAVRSGEVVVRFFIGLHKNNRVNLELWREAQAYGDIQLMPFVDYYSLISLKTIAICIVGTKIIPSKYIMKTDDDAFVRVDEMLSSLRGKSPDGLLYGLISSKSSPDRDKDSKWYISDNEWPYDTYPPWAHGPGYVISRDIAKFVVFGHQERKLQFFKLEDVAMGIWIEQFRNSGKEVHYENDERFYNAGCDSNYILAHYQSPRMVLCLWEKLQKEHKPECCE 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00947 670 Gene3D - 199 394 - -
Vivi1g00947 670 SUPERFAMILY Concanavalin A-like lectins/glucanases 203 395 IPR013320 -
Vivi1g00947 670 Pfam Galactoside-binding lectin 203 393 IPR001079 GO:0030246
Vivi1g00947 670 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 202 395 IPR001079 GO:0030246
Vivi1g00947 670 SMART Gal_bind_lectin_2 206 394 IPR001079 GO:0030246
Vivi1g00947 670 CDD GLECT 203 392 IPR001079 GO:0030246
Vivi1g00947 670 Pfam Galactosyltransferase 436 618 IPR002659 GO:0006486|GO:0016020|GO:0016758
Vivi1g00947 670 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 361 622 IPR002659 GO:0006486|GO:0016020|GO:0016758
Vivi1g00947 670 FunFam Beta-1,3-galactosyltransferase GALT1 416 643 - -
Vivi1g00947 670 Gene3D - 415 647 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00947 Vivi-Chr1 19934398 19940069 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00947 11 670 Glycosyltransferase AT3G06440 49.925 0.0 626
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00947 K20843 - gmx:100816729 1078.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00947 1 19934398 19940069 Vivi1g00947 1 19934398 19940069 ECH
Vivi1g00947 1 19934398 19940069 Vivi2g01992 2 93471231 93477412 PCT