Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00616 ATGGGAACGTTCCAGACATTGAGAAAGGCCTACGGAGCTCTCAAAGATTCCACCAAGGTTGGCCTTGCCAAGGTCAATAGCGAATACAAGGAATTGGACATTGCGATTGTAAAAGCGACAAGTCACGTCGAATATCCTCCTAAGGAACGTCACGTTCGGAAGATATTCTATGCCACATCGGCGCACCAACCACGAGCGGATGTAGCTTATTGCATACACACACTTTCGAAAAGACTTTCCAAGACGCGGAATTGGATAGTTGCTTTAAAGACATTGATAGTCATTCATAGGATATTAAGAGAGGGTGATCCTAGCTTCAAAGAAGATCTTGTAAACTACTCACACAGGGTACAATTTCTCCAAATTTCCAATTTCAAAGATGACTCAACTCCTCTAGCTTGGGATTGTTCTGCATGGGTTCGAACCTACGCACAATTTTTAGAAGAAAGACTTGAATGTTTTAGAATTCTTAAATATGACATCGAGTTCGAGCGTTTAACAAAATCATCACCGACTTCAACTAAGGCACATAGCAGAACAAGGACGTTGAGCAGCGATGAGCTGTTGGAGCAGCTTCCGGCATTGCAGCAACTTCTTTATAGACTTGTTTGTTGTCAGCCTGAAGGAGCAGCTTTCAGCAATTATCTAATACAATATGCATTGGCCCTGATATTGAAAGAGAGCTTCAAAATATATTGTGCCCTCAATGATGGAATCATAAAACTTGTGGATGTGTTCTTCGATATGGCGAGATACGACGCGGTAAAGGCATTGCATATTTATAAAAGAGCAGGCCAACAGGCTGAACATCTTGCTGATTTCTATGAATACTGCAAGGGTTTGGACCTTGCTAGGAATTTTCAATTTCCAATTTTGAGACAGCCACCACCTTCTTTTGTGTCCACAATGGAAGAATACATTAAAGAAGCACCTACATCTCGCAGCGATGATGTTAAGAGACTGGAATATCATGAAAATGATCAATCGCCAAAACAAGAACCAGAACAAAAAGAAACCGAAGAACCTGAAGCAGTCGAGGAACAAGTTGAAGAAGTCAAGGAGGAAGAACATGTTGTTGAGGAACAAACAGAAATGGTCGAACTTCCTCCTCTTATATCAACTGATGATGATGATGATTTGCTGGGTCTAAATGAAATAGATCCAAAAGCACAAGAACTAGAGGACATTAATGCTTTGGCCCTAGCAATTCTACCACCAGGAAACAATTCAAACAATCTTGCTTTGGCTAATTTAAGTGGAACTACTGGTTGGGAACTTGCGCTTGTTACGACGCCAAGCAGCCACACGAGCCAAGCGCCCGATCGCGTAATGGCTGGTGGATTTGACAAGCTACTGCTAGACAGTTTGTACGATGACGAAAATGCAAGAAGGCAACTTCAACTCCAGAATGCAGGTTATGGATATGGCGCAGCGACGATACATAATCCATTTGATAATTATAGTCACCAAGATCCATTTGCAGTATCGAACATTGTAGCGCCTCCACCTAACGTACAAATGGCATCAATGGCACAACAACAACATATGATGTTCCAACAACATCAACAACACAACACGATGATGGTACCTTATCATCAGCAGAATCCATTAACTCAGTACCCTCAACAGATGCCAGTTATGAGTTCTTCTAATCCATTTGGAGATCCGTTACCTGTACCTAGCTATTCTTATAGTCCCATGCACCACCATCAAGGGAACTACAATTTAATGTAG 1734 0.4181 MGTFQTLRKAYGALKDSTKVGLAKVNSEYKELDIAIVKATSHVEYPPKERHVRKIFYATSAHQPRADVAYCIHTLSKRLSKTRNWIVALKTLIVIHRILREGDPSFKEDLVNYSHRVQFLQISNFKDDSTPLAWDCSAWVRTYAQFLEERLECFRILKYDIEFERLTKSSPTSTKAHSRTRTLSSDELLEQLPALQQLLYRLVCCQPEGAAFSNYLIQYALALILKESFKIYCALNDGIIKLVDVFFDMARYDAVKALHIYKRAGQQAEHLADFYEYCKGLDLARNFQFPILRQPPPSFVSTMEEYIKEAPTSRSDDVKRLEYHENDQSPKQEPEQKETEEPEAVEEQVEEVKEEEHVVEEQTEMVELPPLISTDDDDDLLGLNEIDPKAQELEDINALALAILPPGNNSNNLALANLSGTTGWELALVTTPSSHTSQAPDRVMAGGFDKLLLDSLYDDENARRQLQLQNAGYGYGAATIHNPFDNYSHQDPFAVSNIVAPPPNVQMASMAQQQHMMFQQHQQHNTMMVPYHQQNPLTQYPQQMPVMSSSNPFGDPLPVPSYSYSPMHHHQGNYNLM 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00616 577 PANTHER CLATHRIN ASSEMBLY PROTEIN 8 517 IPR045192 GO:0048268|GO:0072583
Vivi1g00616 577 MobiDBLite consensus disorder prediction 310 348 - -
Vivi1g00616 577 SUPERFAMILY GAT-like domain 178 309 - -
Vivi1g00616 577 MobiDBLite consensus disorder prediction 310 338 - -
Vivi1g00616 577 SUPERFAMILY ENTH/VHS domain 31 161 IPR008942 -
Vivi1g00616 577 FunFam Clathrin assembly protein AP180 6 161 - -
Vivi1g00616 577 SMART enth_2 30 161 IPR013809 -
Vivi1g00616 577 Coils Coil 345 365 - -
Vivi1g00616 577 ProSiteProfiles ENTH domain profile. 24 161 IPR013809 -
Vivi1g00616 577 Pfam ANTH domain 31 309 IPR011417 GO:0005543
Vivi1g00616 577 CDD ANTH_N 32 154 - -
Vivi1g00616 577 FunFam Putative clathrin assembly protein 173 321 - -
Vivi1g00616 577 Gene3D - 6 162 IPR008942 -
Vivi1g00616 577 Gene3D ANTH domain 173 328 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00616 Vivi-Chr1 13461442 13465510 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00616 K20044 - gmx:100815975 845.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00616 1 13461442 13465510 Vivi1g00616 1 13461442 13465510 ECH
Vivi1g00616 1 13461442 13465510 Vivi4g02367 4 117029673 117033436 PCT