Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03342 ATGTTGGACACCTACGTGTTTGGATGGATCTTATGCGCCGCGCTGAGCGCATTTGCGATTCGCAATTTCGTTTTCGCGGGGAAGAAATGTTGCGTTTCGTTGGAGACCGATGCCGCTCTGTGCGCCGAAAACATCACCACTGCCGCCGGAGAATGCAGATCGTCGAAGCGCGACGGCGAAGTTGACGTCGTAATTGTCGGAGCTGGTGTCGCCGGCTCCGCTCTGGCTTACACTCTCGGCAAGGATGGACGTCAAGTACTTGTCATTGAAAGAGATTTGAGTGAACCAGACAGAATTGTTGGAGAGTTGCTACAGCCTGGAGGTTATCTCAAGTTAATTGAGCTGGGACTTGAAGATTGTGTGGATAAAATTGATGCTCAACAAGTGTTTGGTTATGCTCTTTTCAAGGATGGGAAACACATAAGACTTTCTTATCCGTTGGAAAAGTTTCACTCAGATGTTGCCGGCAGAAGCTTTCACAATGGGCGTTTTATTCAGAGGATGAGAGAGAAGGCTGCCTCCCTTCCCAATGTAAGACTGGAGCAAGGAACAGTTACTTCCCTACTCGAAGAGAAGGGAGTAATTAAAGGCGTGCAATACAAAACCAAGGATAGTCAAGAATTATCAGTTTGCGCACCCTTTACCATTGTTTGTGATGGCTGTTTTTCAAACTTGCGTCGTTCTCTTTGTAATCCTAAGGTAGATGTGCCCTCTTGTTTCGTAGGCCTAGTTTTGGAGAATTGTGAACTTCCTTATGCAAATCATGGCCATGTCATACTGGGAGAACCTTCACCAGTTCTGTTCTATCCAATAAGTAGTACAGAAATCCGCTGTCTAGTTGATGTTCCTGGTCAGAAAGTTCCGTCTATTTCCAACGGTCAAATGGCTAAGTATTTGAAGACAGTGATCGCTCCACAGGTTCCTCATGAGCTTCATGACGCATTCATAGCTGCAGTGGACAAAGGCAGCATCAGGACAATGCCAAACAGAAGCATGCCAGCAGCTCCTCATCCTACTCCCGGAGCCCTGCTGATGGGAGATGCATTCAACATGCGCCATCCTCTAACGGGGGGTGGCATGACTGTGGCATTATCTGATATAGTAGTGCTTCGAAATCTTCTTAGGCCTTTGCGTGATCTGAATGATGCACCCAGCCTTTGCAAATACCTTGAATCCTTTTATACCTTGCGAAAACCTGTGGCATCCACTATAAATACGCTGGCAGGAGCTCTTCATAAGGTTTTTTGCGCATCACCTGATCCAGCGAGGATGGAAATGCGCCAAGCTTGCTTCGATTATCTTAGTCTTGGAGGTCAATTCTCGGAAGGGCCAATCTCTCTGCTTTCGGGGTTAAATCCTCGCCCCTTGACCCTGGTTCTCCATTTCTTTGCTGTTGCAATATATGGCGTCGGCCGTTTACTGCTACCATTTCCTTCACCTAAACGGATATGGACTGGACTTCGATTAATTTCTAGTGCATCCGGTATCATCATGCCAATAATCAAGGCAGAAGGAGTCCGTCAGATGTTCTTCCCTGCAACCGTTCCAGCTTATTACCGAAATCCACCGCCTGCCTAA 1578 0.4715 MLDTYVFGWILCAALSAFAIRNFVFAGKKCCVSLETDAALCAENITTAAGECRSSKRDGEVDVVIVGAGVAGSALAYTLGKDGRQVLVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVDKIDAQQVFGYALFKDGKHIRLSYPLEKFHSDVAGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEEKGVIKGVQYKTKDSQELSVCAPFTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCELPYANHGHVILGEPSPVLFYPISSTEIRCLVDVPGQKVPSISNGQMAKYLKTVIAPQVPHELHDAFIAAVDKGSIRTMPNRSMPAAPHPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLRPLRDLNDAPSLCKYLESFYTLRKPVASTINTLAGALHKVFCASPDPARMEMRQACFDYLSLGGQFSEGPISLLSGLNPRPLTLVLHFFAVAIYGVGRLLLPFPSPKRIWTGLRLISSASGIIMPIIKAEGVRQMFFPATVPAYYRNPPPA 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03342 525 PANTHER SQUALENE MONOOXYGENASE 42 523 IPR040125 GO:0004506|GO:0016126
Viun9g03342 525 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 339 354 - -
Viun9g03342 525 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 354 370 - -
Viun9g03342 525 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 211 226 - -
Viun9g03342 525 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 62 84 - -
Viun9g03342 525 FunFam Squalene monooxygenase 2 55 435 - -
Viun9g03342 525 Pfam Squalene epoxidase 212 484 IPR013698 GO:0004506|GO:0016020|GO:0050660
Viun9g03342 525 Gene3D - 54 426 IPR036188 -
Viun9g03342 525 Pfam FAD dependent oxidoreductase 62 92 IPR006076 GO:0016491
Viun9g03342 525 SUPERFAMILY FAD/NAD(P)-binding domain 61 434 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03342 Viun-Chr9 40052504 40056737 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03342 58 523 Miscellaneous Gene Families AT1G58440 80.901 0.0 797
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03342 K00511 - gmx:100820031 920.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03342 9 40052504 40056737 Viun9g03342 9 40052504 40056737 ECH
Viun8g00443 8 3155885 3159877 Viun9g03342 9 40052504 40056737 PCT