Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00443 ATGGTGGATCCGTATGTTCTTGGCTGGATTCTGTGTTCCGTTCTGAGTCTCTTCGCGCTCTACAGCCTCGCCTTCGGCGGAGAGAGCCGGCGTCGCGCTTCTCTGCCGAAGCCGGTGAACAGAATCGAGTTATCGGAAACCGTGACCACCTCCACTAGTGAATGCAGATCGGATAAACGCGATGGCGACGCTGACGTCATTATTGTCGGAGCTGGTGTAGCCGGCGCAGCTCTGGCGCACACTCTCGGAAAGGATGGGCGTCGAGTACACGTGATTGAAAGAGATCTGAGTGAGCCTGACCGTATTGTTGGAGAGTTGCTACAACCAGGTGGCTATCTCAAATTGGTTGAGCTGGGGCTTGAAGACTGTGTAGACAAAATTGATGCTCAGCAAGTATTTGGCTATGCCCTTTTCAAGGATGGGAAACATACTCGTCTCTCTTACCCCTTAGAGAAGTTTCACTCAGATGTCTCTGGCAGGAGCTTTCACAATGGTCGCTTTATTCAGAGGATGCGGGAAAAGGCTTCCACCCTTCCCAACGTGCGATTAGAGCAAGGAACAGTGACTTCCCTAGTTGAAGAGAAAGGGACAATTAAAGGTGTGCAATATAAGAACAAAGATGGTCAGGAATTGACAACATTTGCACCTCTTACCATTGTTTGTGATGGCTGCTTCTCAAACTTACGCCGTTCTCTCTGTAATCCTAAGGTGGATGTTCCCTCTTGTTTTGTTGGTTTACTTTTAGAGAACTGCGAGCTTCCATGCGCAAATCATGGCCACGTTATACTGGGAGACCCTTCACCCATTCTATTCTATCGTATAAGTAGTACAGAGATTCGGTGTCTGGTCGATGTACCTGGTAAGAAGGTTCCTTCTATTTCAAACGGTGAAATGGAAAAGTATTTGAAGACAACAGTAGCTCCACAGATTCCCCCTGAACTTTATGATGCCTTCATAGCTGCTGTGGACAAGGGCAACATAAGGACAATGCCAAACAGAAGCATGCCGGCAGATCCTCTTCCTACACCTGGAGCCCTTCTGATGGGAGATGCATTCAACATGCGGCATCCACTAACAGGAGGCGGAATGACTGTCGCATTGTCTGATATTGTTGTGCTGAGAAATCTTCTAAGGCCCTTGCCTGACCTCAATGATGCACCCACACTCTGCAAGTACCTCGAATCCTTTTATACCTTGCGTAAGCCTGTGGCATCCACCATAAATACATTGGCAGGTGCGCTTTACAAAGTTTTTTGTGCATCCCCTGATCAGGCAAGGAAGGAAATGCGGCAAGCTTGCTTTGATTATCTAAGCCTTGGAGGCCTATTCTCGGAAGGACCAGTTTCTTTACTTTCTGGATTAAACCCTCGTCCTTTGAGTTTGGTTCTCCATTTCTTTGCTGTTGCAATATATGGTGTTGGCCGTTTATTGTTACCGTTTCCTTCACCTAAGAGAATATGGATTGGGGCCCGACTAATCTCTGGTGCATCTGGAATCATCTTCCCCATAATTAAGGCTGAAGGGATTCGGCAAATGTTTTTCCCTGCGACTGTTCCAGCTTATTACAGAGCTCCCCCGGTTGGACAATAG 1590 0.4761 MVDPYVLGWILCSVLSLFALYSLAFGGESRRRASLPKPVNRIELSETVTTSTSECRSDKRDGDADVIIVGAGVAGAALAHTLGKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLVELGLEDCVDKIDAQQVFGYALFKDGKHTRLSYPLEKFHSDVSGRSFHNGRFIQRMREKASTLPNVRLEQGTVTSLVEEKGTIKGVQYKNKDGQELTTFAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLLLENCELPCANHGHVILGDPSPILFYRISSTEIRCLVDVPGKKVPSISNGEMEKYLKTTVAPQIPPELYDAFIAAVDKGNIRTMPNRSMPADPLPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLRPLPDLNDAPTLCKYLESFYTLRKPVASTINTLAGALYKVFCASPDQARKEMRQACFDYLSLGGLFSEGPVSLLSGLNPRPLSLVLHFFAVAIYGVGRLLLPFPSPKRIWIGARLISGASGIIFPIIKAEGIRQMFFPATVPAYYRAPPVGQ 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00443 529 PANTHER SQUALENE MONOOXYGENASE 20 526 IPR040125 GO:0004506|GO:0016126
Viun8g00443 529 FunFam Squalene monooxygenase 2 58 438 - -
Viun8g00443 529 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 342 357 - -
Viun8g00443 529 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 65 87 - -
Viun8g00443 529 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 357 373 - -
Viun8g00443 529 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 214 229 - -
Viun8g00443 529 Pfam Squalene epoxidase 214 487 IPR013698 GO:0004506|GO:0016020|GO:0050660
Viun8g00443 529 SUPERFAMILY FAD/NAD(P)-binding domain 64 438 IPR036188 -
Viun8g00443 529 Gene3D - 58 433 IPR036188 -
Viun8g00443 529 Pfam NAD(P)-binding Rossmann-like domain 68 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00443 Viun-Chr8 3155885 3159877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00443 46 529 Miscellaneous Gene Families AT1G58440 80.698 0.0 818
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00443 K00511 - gmx:100804406 950.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00443 8 3155885 3159877 Viun8g00443 8 3155885 3159877 ECH
Viun8g00443 8 3155885 3159877 Viun9g03342 9 40052504 40056737 PCT