Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03113 ATGCCTTCCTTTTCCACTCTCCGGAGATTCTCTCTGTTCACTCAACGTTTCCGTACCCTGAATTCTTCCACTTCGCAATCTTCATTTTCATCTTCATCTTCATCTTCATCTTCTCCCGCTCCTCGTCGCAGTCCCAGTTGGGCTTCAGGTTCAGCCATTGTTGCAGTTGCAGGCGTAACCTCTGCTCTTGCTCTTTTCTATTGCTACAACTCACCCACTTCACCCTTCCATTCCGTTTTCTTTGATAATACCCTTCCCGCGTCTTCCCCGCCGGTCTCTGAAAAATCACCCCTTCCTGCAACTGCTCCTGGTTTGCTTGTTGATGAGTACAAAACCAAGATTTACTTCAACTATGAGAAGCGCCTGCGGTTGCATAGTCCACCCGAAAAGGTTTTTGAATACTTTGCGTCTTGTCGTACTCCAAAAAGAGAGATATTCATGAAGCCTGCAGACCTAATGCGAGCAATTGTTCCTGTTTTTCCTCCATCAGAATCCAACATAATAAGAGAGGGAAGCTTGACAGGTGAAAAAAATCCTGATCATTTGTGGTGTCCCCCTTCGGATTTTTTTATGCTTTTTGATGTAGACAAAGATGGACTTATATCCTTCAAAGAGTATATGTTTTTGGTAACTCTGCTTAGCATCCCAGAATCAAGCTTCTCCGCAGCATTTAAAATGTTTGACAAGGATAATGACGGAGAAATAGACCATGAAGAATTCAAGAAAGTCATGCAATCAATGCGATCTCATACCAGACATGGTGATTACCATGGGCATGGAAGACGAACTGGCCGAACCACCAATGCTTCTGTAGAGAATGGAGGGCTGGTGAAATACTTATTTGGTAAAGATGGAAAGGGACGCCTAAATCATGATAAATTCGTCCAGTTTATGAGAGATTTCCATGATGAAATTGTGAGGTTGGAGTTTGCTCATTATGATTACAAATCTCGAAAAACTATACCGGCCATGGACTTTGCTCGCTCCATTGTTGCTTCTGCTGACTTGAGTCATATAGGCAAGTTGCTTGATCTGGCTGATGAATTGAGAATTGATCCACGGTTTAAGGATGTACGCATAACATTTGAGGAGTTCAAAAACTTTTCCGAGCTGCGGAAAAAGTTATTACCATTTTCGCTGGCCATTTTCAGTTTTGCAGAAGTACAAGGCCTGTTAACAAGAGATGATTTTAAGCGAGCTGCTTCACATGTTTGCGGTTTATCTCTGTCGGACAATGTGGTTGAGATTGTTTTCCATTTGTTTGATGCAAATAGGGATGGAAGCTTGAGTACAGAGGAGTTTGTTAAAGTGCTACAACATCGAGAAAAAGACATTGCTCAAACCATGGGGACAGGAATCGTAGGTTTTTTGTCATGCTGCTGGAAATGTACGGACACCTCTCCATCTTCACGGTTGTTTTCCTGGTTTTGA 1431 0.4263 MPSFSTLRRFSLFTQRFRTLNSSTSQSSFSSSSSSSSSPAPRRSPSWASGSAIVAVAGVTSALALFYCYNSPTSPFHSVFFDNTLPASSPPVSEKSPLPATAPGLLVDEYKTKIYFNYEKRLRLHSPPEKVFEYFASCRTPKREIFMKPADLMRAIVPVFPPSESNIIREGSLTGEKNPDHLWCPPSDFFMLFDVDKDGLISFKEYMFLVTLLSIPESSFSAAFKMFDKDNDGEIDHEEFKKVMQSMRSHTRHGDYHGHGRRTGRTTNASVENGGLVKYLFGKDGKGRLNHDKFVQFMRDFHDEIVRLEFAHYDYKSRKTIPAMDFARSIVASADLSHIGKLLDLADELRIDPRFKDVRITFEEFKNFSELRKKLLPFSLAIFSFAEVQGLLTRDDFKRAASHVCGLSLSDNVVEIVFHLFDANRDGSLSTEEFVKVLQHREKDIAQTMGTGIVGFLSCCWKCTDTSPSSRLFSWF 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03113 476 SMART efh_1 219 247 IPR002048 GO:0005509
Viun9g03113 476 SMART efh_1 413 441 IPR002048 GO:0005509
Viun9g03113 476 SMART efh_1 185 213 IPR002048 GO:0005509
Viun9g03113 476 SUPERFAMILY EF-hand 279 370 IPR011992 -
Viun9g03113 476 CDD EFh 190 245 IPR002048 GO:0005509
Viun9g03113 476 ProSitePatterns EF-hand calcium-binding domain. 422 434 IPR018247 -
Viun9g03113 476 Pfam EF-hand domain pair 390 441 IPR002048 GO:0005509
Viun9g03113 476 CDD EFh_MICU 220 441 - -
Viun9g03113 476 ProSiteProfiles EF-hand calcium-binding domain profile. 215 250 IPR002048 GO:0005509
Viun9g03113 476 Pfam EF hand 221 247 IPR002048 GO:0005509
Viun9g03113 476 SUPERFAMILY EF-hand 188 439 IPR011992 -
Viun9g03113 476 Gene3D - 167 256 - -
Viun9g03113 476 PANTHER EF HAND DOMAIN FAMILY A1,A2-RELATED 30 465 IPR039800 GO:0005509|GO:0006851
Viun9g03113 476 Gene3D - 279 460 - -
Viun9g03113 476 Pfam EF hand 188 207 IPR002048 GO:0005509
Viun9g03113 476 ProSitePatterns EF-hand calcium-binding domain. 228 240 IPR018247 -
Viun9g03113 476 ProSiteProfiles EF-hand calcium-binding domain profile. 409 444 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03113 Viun-Chr9 38619676 38622854 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03113 95 406 EF-hand Containing Proteins AT4G32060 65.176 2.38e-141 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03113 K22827 - gmx:100786375 688.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03113 9 38619676 38622854 Viun9g03113 9 38619676 38622854 ECH
Viun8g00749 8 6457141 6463415 Viun9g03113 9 38619676 38622854 PCT