Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00749 ATGTCTTCCTTTTCCTCCTTCAGAACCCGATCCTCACCGTTCATCGCCCAAAGCTTCTCGATCCATCGGTTCCAGATCCGTCACTCCTCCACCTCTCCCTCCGCCTCCTCGCACCTCAACTCCGGCGACCCTGTTCGAACCGGTTTCGGTCGAACTGCACTTTCGACCGCCCTGGCCGGCTCTGGTGTCCTAGGGCTTCTTCTGTACGGCTTCTACTCTTTTTCGCCTACTGCAAATTTTGAATCCATCGCTTCTCTAGTTGACCGGTCAACATCGAATTCCGAAGATCAAAAACCACCACGTCGCACCTTCTTTCCCAAATTTTCACTTCCTGAAAGTTCTGGCTTGCTACTTGGAGATGAGTTCAGGAGAAATATTTTTTTCAACTATGAGAAGCGCATGCGGTTGCGAAGTCCTCCGGAGAAGGTTTTTGGGTACTTTGCATCTGATCGCAGTCCAAAAGGAGAAGTATTGATGAAACCAGCAGACCTGATGCGGGCGGTGGTTCCTGTTTTCCCTCCATCTGAATCCAACCTTGTTAGAGATGGATACTTGGGAGGAGAAAGGAGTCCGGGTCATTTACGGTGCCCTCCTTCTGAGTTTTTTATGCTTTTTGATGTAAACAATGATGGGCTTATATCTTTTAAAGAGTATATCTTCTTTGTAACACTACTCAGCATCCCGGAATCAAGTTTTACAGTGGCATTTAAAATGTTTGATGTCAACAATAATGGGGAGATAAATAAGGAAGAGTTCAAGAAAGTGATGGCATTGATGCGATCTCGTCATCGACAGGGTGTTCACCACAGGGATGGACTGCGAACTGGCCTAAAGGTGAACGATTCTGTTGAAGATGGAGGGCTGGTGGAATATTTTTTTGATAAAGATGGAAATGGATGCCTCCAGCATGATAAATTTGTTAAATTTTTGAGAGACTTGCATGATGAGATTCTGAGACTGGAGTTTGCTCATTATGACTACAAATCACAAGAAACCATATCAGCAAAGGACTTTGCACTCTCCATGGTTGCTTCTGCAGACATGAGTCATCTAAGCAGGTTGCTTAAACGGGTTGCTATGTTGAATGATGATCCATGCCTCAAGGATGCACGTATCACTTTCGAGGAATTCAAAAACTTTGCAGAGCTACGAAAGAAATTAGTGCCATTTTCATTGGCTCTTTTTAGTTTTGGAGAAGTAAACGGTCTGTTGACAAGAGACGATTTTCAGAGGGCAGCATCACAGGTATGCGGCATATCTCTCTCGGACAATGTGGTTGAAATTGTTTTCCATTTGTTTGACACAAACCGGGACGGAAACCTAAGTTTTGATGAGTTTGTGAGGGTGCTACACCAGCGAGAAAGGGACATTGCACAACCCGTGGAGACAGGAATCATGGGTTTGTTATCACGCTTCTGGCATGGTAGTAATAACAGCTTCTCGTCTTCTGGGTTGTTTCCCTGA 1464 0.4508 MSSFSSFRTRSSPFIAQSFSIHRFQIRHSSTSPSASSHLNSGDPVRTGFGRTALSTALAGSGVLGLLLYGFYSFSPTANFESIASLVDRSTSNSEDQKPPRRTFFPKFSLPESSGLLLGDEFRRNIFFNYEKRMRLRSPPEKVFGYFASDRSPKGEVLMKPADLMRAVVPVFPPSESNLVRDGYLGGERSPGHLRCPPSEFFMLFDVNNDGLISFKEYIFFVTLLSIPESSFTVAFKMFDVNNNGEINKEEFKKVMALMRSRHRQGVHHRDGLRTGLKVNDSVEDGGLVEYFFDKDGNGCLQHDKFVKFLRDLHDEILRLEFAHYDYKSQETISAKDFALSMVASADMSHLSRLLKRVAMLNDDPCLKDARITFEEFKNFAELRKKLVPFSLALFSFGEVNGLLTRDDFQRAASQVCGISLSDNVVEIVFHLFDTNRDGNLSFDEFVRVLHQRERDIAQPVETGIMGLLSRFWHGSNNSFSSSGLFP 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00749 487 SUPERFAMILY EF-hand 288 452 IPR011992 -
Viun8g00749 487 Gene3D - 400 458 - -
Viun8g00749 487 PANTHER EF HAND DOMAIN FAMILY A1,A2-RELATED 37 472 IPR039800 GO:0005509|GO:0006851
Viun8g00749 487 Pfam EF hand 201 218 IPR002048 GO:0005509
Viun8g00749 487 CDD EFh_MICU 232 453 - -
Viun8g00749 487 Gene3D - 263 396 - -
Viun8g00749 487 Pfam EF-hand domain pair 402 450 IPR002048 GO:0005509
Viun8g00749 487 Pfam EF hand 235 258 IPR002048 GO:0005509
Viun8g00749 487 ProSitePatterns EF-hand calcium-binding domain. 434 446 IPR018247 -
Viun8g00749 487 SMART efh_1 197 225 IPR002048 GO:0005509
Viun8g00749 487 SMART efh_1 425 453 IPR002048 GO:0005509
Viun8g00749 487 SMART efh_1 231 259 IPR002048 GO:0005509
Viun8g00749 487 Gene3D - 178 262 - -
Viun8g00749 487 ProSiteProfiles EF-hand calcium-binding domain profile. 227 262 IPR002048 GO:0005509
Viun8g00749 487 SUPERFAMILY EF-hand 200 452 IPR011992 -
Viun8g00749 487 ProSiteProfiles EF-hand calcium-binding domain profile. 421 456 IPR002048 GO:0005509
Viun8g00749 487 ProSitePatterns EF-hand calcium-binding domain. 240 252 IPR018247 -
Viun8g00749 487 CDD EFh 200 257 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00749 Viun-Chr8 6457141 6463415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00749 1 418 EF-hand Containing Proteins AT4G32060 61.697 6.06e-171 487
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00749 K22827 - gmx:100806575 732.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00749 8 6457141 6463415 Viun9g03113 9 38619676 38622854 PCT