Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03080 ATGTCTCAAGTCTTCAGCTTTTCAGGAAATGATGATTTTTACCCTGGGGGTCGTATATATCCTAACCCCAAGGAACCATGTCTCTTCTTGTCTCTTGGCCGTTCTGTTGATTACTTTCCTCTTCAGAAGAGATCTCGCGTCAGTGTTCCGTTTGATATCAATCGAGAATGGTTTGATGAGCCGAAGCAGAAGACATCTATTGAATCTCTGCCAGATGAATGCCTCTTCGAGATCCTTAGAAGATTGCCTGTTGGCCAAGATAGGAGCGTCTGTGCTTCTGTATCCAAGCGCTGGCTTATGCTTCTAAGCAGTATTTGTGAGAATGAAATCTGCAGCAATGGAAGTACTCAAGATGATAATGTGGTTGTTGATGATGCTGAGGGACTTAGCAACGAAGGATATCTATCCCGAAGCTTGGAGGGAAAGAAGGCAACAGATGTAAGGCTTGCTGCCATTGCTGTTGGAACCGCCTCTCGAGGAGGACTGGGGAAGCTTACAATTCGCGGAAGCAATTCAGACCGTGGGGTGACTAATGTGGGTCTCAAGGCCATTGCTCATGGATGCCCTTCTCTGAAGGTTTTCTCTGTGTTTGATGTTGCTACTATTGATGATGAAGGCCTAATTGAGATTGCCAGCGGGTGTCATAAGTTGGAGAAACTCGACCTTTGCAAGTGTCCCAATATTTCTGACAAGACTTTGATCGCAATCTCAAAGAAGTGTCCAAATCTGGCTGAGTTATCAATTGAGTCATGTCCCAACATTGGCAACGAAGGTCTACAAGCTATTGGGAAGTTGTGTCCCAATCTAAGGTCTGTATCGATCAAGGGTTGCTCCGGAGTTGGCGATCAGGGGGTTTGTGGCCTCATGTCTTCGGCTTCTTATGTTCTATCAAAGGTGAAGCTTGAGTCGTTGATGGTGTCTGATCTCTCTCTAGCAACTATCGGGCATTATGGCTTTCAAGTTACTGATCTTGTCCTAAGTGGCCTTCCAAATGTCAGTGAGAAAGGGTTCTGGGTTATGGGTAATGGCCGTGGACTGCAGAAATTGAATTCAATCACAATTGAATGCTGCCAAGGATTGACAGACACAGCGATCGAAGCTGTTGGAAAGGGTTGTCCAAATGTGAAAAACTTCCAGCTTCGTAAATGTGCATATCTGTCGGACAAGGGGTTGGTTTCATTTACCAGGGCTGCTCTATCAATTGAGAGCCTAAAATTGCAGGAGTGCCACAGAATTACCCAAATTGGGCTTTTTGGTGTCTTTTTTCACTGTGCTGCCAAACTGAAGGTTCTCACTCTGATTAGCTGCTATGGAATCAAAGACCTGGACTTGGATTTGCCGGCAATCTCTCCTTCTGAATCATTTTGGTCCTTAACAATCCGTGACTGCCCTGGATTTGGCGACGCCAATCTTGCACTACTTGGAAAACTGTGCCCTCGGCTTAAGCATGTTGAATTGAGTGGACTTCAGAGAGTAACAGACGTAGGGTTTCTTCCACTGCTGGAGTGTTCTGAGACTGGTCTGACAACAGTTAATTTAAGTGGATGTCTAAATGTGACAGACAGAGTAGTTTTGTCTGTTGTGAACTCATATGGATGGACTCTTCAAGTGCTATGTCTTGATGGTTGTACAAGAGTCACCGATGCTAGCATGATGGCAATTGCAGGCAATTGCCCAATGCTCTCTGATCTTGATGTTTCCAAATCTGCAATCACTGATACCGGTATTGCAGCTCTTGCACGCGGAAATCAGATCAGCCTGGAGATACTTTCTTTTTCAGGTTGTGTATCGGTTTCAGACAAGAGCATTCCCGCATTTAAAAAATTGGGCCAATCCCTTGCAGGATTGAATATCAAGCGTTGCAGCGCAATCAGCAACCGGGGAGTCAGCAAGCTTCAGGAACATCTCTGGACGTGTGACATCCTCTACTGA 1932 0.4545 MSQVFSFSGNDDFYPGGRIYPNPKEPCLFLSLGRSVDYFPLQKRSRVSVPFDINREWFDEPKQKTSIESLPDECLFEILRRLPVGQDRSVCASVSKRWLMLLSSICENEICSNGSTQDDNVVVDDAEGLSNEGYLSRSLEGKKATDVRLAAIAVGTASRGGLGKLTIRGSNSDRGVTNVGLKAIAHGCPSLKVFSVFDVATIDDEGLIEIASGCHKLEKLDLCKCPNISDKTLIAISKKCPNLAELSIESCPNIGNEGLQAIGKLCPNLRSVSIKGCSGVGDQGVCGLMSSASYVLSKVKLESLMVSDLSLATIGHYGFQVTDLVLSGLPNVSEKGFWVMGNGRGLQKLNSITIECCQGLTDTAIEAVGKGCPNVKNFQLRKCAYLSDKGLVSFTRAALSIESLKLQECHRITQIGLFGVFFHCAAKLKVLTLISCYGIKDLDLDLPAISPSESFWSLTIRDCPGFGDANLALLGKLCPRLKHVELSGLQRVTDVGFLPLLECSETGLTTVNLSGCLNVTDRVVLSVVNSYGWTLQVLCLDGCTRVTDASMMAIAGNCPMLSDLDVSKSAITDTGIAALARGNQISLEILSFSGCVSVSDKSIPAFKKLGQSLAGLNIKRCSAISNRGVSKLQEHLWTCDILY 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03080 643 Gene3D Ribonuclease Inhibitor 254 447 IPR032675 -
Viun9g03080 643 Gene3D Ribonuclease Inhibitor 105 253 IPR032675 -
Viun9g03080 643 SMART LRR_CC_2 610 635 IPR006553 -
Viun9g03080 643 SMART LRR_CC_2 398 423 IPR006553 -
Viun9g03080 643 SMART LRR_CC_2 266 291 IPR006553 -
Viun9g03080 643 SMART LRR_CC_2 532 557 IPR006553 -
Viun9g03080 643 SMART LRR_CC_2 584 609 IPR006553 -
Viun9g03080 643 SMART LRR_CC_2 346 371 IPR006553 -
Viun9g03080 643 SMART LRR_CC_2 478 503 IPR006553 -
Viun9g03080 643 SMART LRR_CC_2 188 213 IPR006553 -
Viun9g03080 643 SMART LRR_CC_2 505 530 IPR006553 -
Viun9g03080 643 SMART LRR_CC_2 558 582 IPR006553 -
Viun9g03080 643 SMART LRR_CC_2 214 239 IPR006553 -
Viun9g03080 643 SMART LRR_CC_2 240 265 IPR006553 -
Viun9g03080 643 SMART LRR_CC_2 372 397 IPR006553 -
Viun9g03080 643 SUPERFAMILY F-box domain 61 104 IPR036047 GO:0005515
Viun9g03080 643 SUPERFAMILY RNI-like 174 419 - -
Viun9g03080 643 Pfam F-box domain 68 105 IPR001810 GO:0005515
Viun9g03080 643 FunFam EIN3-binding F-box protein 1 253 443 - -
Viun9g03080 643 Pfam Leucine Rich repeat 239 262 IPR001611 GO:0005515
Viun9g03080 643 Pfam Leucine Rich repeat 557 580 IPR001611 GO:0005515
Viun9g03080 643 PANTHER UNCHARACTERIZED 457 632 - -
Viun9g03080 643 Gene3D - 60 104 - -
Viun9g03080 643 SMART fbox_2 70 111 IPR001810 GO:0005515
Viun9g03080 643 FunFam EIN3-binding F-box protein 1 60 109 - -
Viun9g03080 643 FunFam EIN3-binding F-box protein 1 504 641 - -
Viun9g03080 643 Gene3D Ribonuclease Inhibitor 448 642 IPR032675 -
Viun9g03080 643 SUPERFAMILY RNI-like 304 639 - -
Viun9g03080 643 FunFam EIN3-binding F-box protein 1 134 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03080 Viun-Chr9 38403670 38407239 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03080 K14515 - gmx:100805418 1043.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03080 9 38403670 38407239 Viun9g03080 9 38403670 38407239 ECH
Viun8g00780 8 6821254 6824846 Viun9g03080 9 38403670 38407239 PCT