Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02862 ATGGCAACGCAATCGTTAGACGAAGAAACAACTAAGAAAGTGATACGACAAGTGGAGTTTTATTTCAGCGACAGCAACCTTCTCACCGATGGTTTTATGAGGAAGAATATCACTGAAAGCGAAGATGGATTGATTAGTTTGGCTCTGATTTGCTCTTTTAATCGGATGCGTACGCACCTTAGTTTGGGTGATGTGAAGCTCGAAGAAGTGCCCGAAGATATCGTGAATGCTGTTGCCCAAACTTTGAGAAATTCGGCTTCACTCAAGGTCTCTGAAGATGGGAAAAAAGTTGGCAGAACAACAGAACTTCCGAGACCAGAAGTGGTTGAGCAGGTGGAGATAAGAACACTTGCTGTATCACCATTTGAATATGATCTGAAACTTGAAGATGTGGAGAAATTCTTTGGTCAATATGCTAAGGTTAATAGTGTTCGGCTTCCCCCTCATGTTGGAGACAAAAGGTTCTTCTGTGGCACTGCCCTTGTTGAATTCTCATCAGATGAAGAAGTAGAAAAGGTTATGAAAGAGAAATTGGTGTATGGCGGGGCTGAGTTAGAATTAAAACTCAAGAAGGACTTTGATGCAGAGAGGGAAAAAGAATTAGAAGATTTTAAAAAATCTCGTCCACCTTTGGGTTCAAATCACCAGAATAACTCAAAGGAAGAAGAAGAAAGCTACCCTAAAGGCTTAATTATTGCCTTCAAACTAAAGAGTATTTCAGATGACATTCCTTCAGACCAAAGCGTTGCTGATCAAAATAATAGCCCTGTCCCCAAAACAGGTGAAAAGCCTGAAATTGCTGCTGGAGAAAATGACCGAAAGGTAGATGAAGAAAGCAATGAGACAAAAGAAGCAAAGGAAACTGGAAGTCAAAACAACAATGAGGTGAAAGAAGCAAAGGAAACTGGAAGTGAAGACAACAATGAGATGAGAGAAGCCAAGGAAACTGGAAGTCAGGACAACAATGAGATGGAAGAAGAAAAGGAAACTGAAAGCAAAGAAAATAATGAAACAAAAGAAAATGAAAGCCCAGAAAAGAAGCCACAAACTGGTGAAAAATTTTCTGCCGCTGCTTACAAGGACAACATGGATGTAGTCTCACGTGAGGATTTAAAGAGTGTCTTCGAAAAATTTGGTACAGTGAAGTACATCGATTTCAAGATTGGAGAAGTGTCAGGATATATCCGATTTGAAGAAACGGAAGCTTCTATGAAAGCTCGTGCTGCTGCAGTTATTTCAGAAAAGTGCGGTTTGGTGGTAAAGAATTTCATTGCTATTTTAGATCCACTGACTGGTGATGCCGAAAAAGAATACTGGAGCCGTCTTCGTGGTAGTCAAGGCAAGCACCGACAATTTATGAATAAGCAGGGAAGGGGAGGATGGCATGGTAGAGGGAGCAAACATGCACGCTCTAGAGAGAATGGTTCTACATTTGGTCGCGCAAATAAGGCTAAGAAAATTGGTGCTGCATAA 1473 0.4087 MATQSLDEETTKKVIRQVEFYFSDSNLLTDGFMRKNITESEDGLISLALICSFNRMRTHLSLGDVKLEEVPEDIVNAVAQTLRNSASLKVSEDGKKVGRTTELPRPEVVEQVEIRTLAVSPFEYDLKLEDVEKFFGQYAKVNSVRLPPHVGDKRFFCGTALVEFSSDEEVEKVMKEKLVYGGAELELKLKKDFDAEREKELEDFKKSRPPLGSNHQNNSKEEEESYPKGLIIAFKLKSISDDIPSDQSVADQNNSPVPKTGEKPEIAAGENDRKVDEESNETKEAKETGSQNNNEVKEAKETGSEDNNEMREAKETGSQDNNEMEEEKETESKENNETKENESPEKKPQTGEKFSAAAYKDNMDVVSREDLKSVFEKFGTVKYIDFKIGEVSGYIRFEETEASMKARAAAVISEKCGLVVKNFIAILDPLTGDAEKEYWSRLRGSQGKHRQFMNKQGRGGWHGRGSKHARSRENGSTFGRANKAKKIGAA 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02862 490 SUPERFAMILY "Winged helix" DNA-binding domain 6 106 IPR036390 -
Viun9g02862 490 MobiDBLite consensus disorder prediction 200 225 - -
Viun9g02862 490 CDD LA_like_plant 10 99 - -
Viun9g02862 490 Pfam RNA binding motif 366 458 IPR014886 GO:0003723
Viun9g02862 490 Pfam La domain 14 83 IPR006630 -
Viun9g02862 490 PANTHER LUPUS LA PROTEIN-RELATED 10 351 IPR045180 -
Viun9g02862 490 SMART la 8 100 IPR006630 -
Viun9g02862 490 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 192 IPR000504 GO:0003723
Viun9g02862 490 Gene3D - 2 104 IPR036388 -
Viun9g02862 490 MobiDBLite consensus disorder prediction 452 490 - -
Viun9g02862 490 FunFam La protein 2 6 106 - -
Viun9g02862 490 MobiDBLite consensus disorder prediction 243 355 - -
Viun9g02862 490 SMART rrm1_1 357 421 IPR000504 GO:0003723
Viun9g02862 490 SMART rrm1_1 116 188 IPR000504 GO:0003723
Viun9g02862 490 PRINTS Lupus La protein signature 156 174 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Viun9g02862 490 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Viun9g02862 490 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Viun9g02862 490 Gene3D - 108 206 IPR012677 -
Viun9g02862 490 Coils Coil 296 342 - -
Viun9g02862 490 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 176 IPR000504 GO:0003723
Viun9g02862 490 SUPERFAMILY RNA-binding domain, RBD 106 192 IPR035979 GO:0003676
Viun9g02862 490 Gene3D - 355 458 IPR012677 -
Viun9g02862 490 ProSiteProfiles La-type HTH domain profile. 4 107 IPR006630 -
Viun9g02862 490 CDD RRM1_La 116 188 - -
Viun9g02862 490 ProSiteProfiles xRRM domain profile. 345 475 IPR014886 GO:0003723
Viun9g02862 490 MobiDBLite consensus disorder prediction 243 259 - -
Viun9g02862 490 SUPERFAMILY RNA-binding domain, RBD 366 452 IPR035979 GO:0003676
Viun9g02862 490 MobiDBLite consensus disorder prediction 265 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02862 Viun-Chr9 37034987 37038417 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02862 K11090 - gmx:100803099 715.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g02862 9 37034987 37038417 Viun9g02862 9 37034987 37038417 ECH
Viun8g00935 8 9798561 9802950 Viun9g02862 9 37034987 37038417 PCT