Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00935 ATGGCGACCGCGTCGCTGGACGATGAAACCGCGAAGAAAGTCGTACGACAGGTGGAGTTCTACTTCAGTGATAGCAACCTTCCCAGAGACAACTTTCTCAAGAAAACCGTCAGTGAAAGCGAAGATGGCATGGTTAGTTTGGCTCTTATTTGTTCTTTTAACCGGATGCGAAAGCACCTTAAATTGGAGGAAGTTAAGTCGGCGGAGGTGCCCGACGATACAGTCAAAGCTGTTGCTCAAGCTTTGAAAGATTCGGCTTTGGTCAGACTCTCAGAAGATGGGAGCAAAGTTGGTAGGTCAACTAAGCTTCTGAAGCCAGAAGAGGTAATTGAGCAGGTAGAGATAAGAACAATTGCTGCATCGCCATTTCAATATGATGTGAAGCTTGAAGATGTGGAGGCATTCTTTGGTCAATATGCCAAGGTTAACAGCGTGCGGTTGCCTCGCCATGTTGGAGACAAAAGGGTTTTTTGTGGCACTGCTCTTGTTGAGTTTTCATCCGATGAAGAAATGGAAAAAATTTTGAAGCAAAGTCTTGTCTATGCAGGGGCTGAGTTAGAATTAAAGCCAAAGAAGGACTTTGACGTGCAGAGAGAGAAAGAATTAAAAGAGCAAGAAAAATTTCGTCCACCCGTGGGTGTAGATCACCAAAGTAACATAAGTACAGAAGCAGACTACCCTATAGGGTTACTTATAGCCTTCAAGCTAAAAATTATTTCTGATGAAGTTCCATCGGAGCAAAATAACCCTGAACAACAAACCAATGATGCTCATGATATCTCCAAAACCGATCAACAAAATCCATCTGAAATTGCTGCTGAGGAAAGTGGTAAAAATATATCAGAAAATGATGAGAATGATAAAGAAAATGGTGAGGTGAGTGAAGGAAAAGAAACTGAGGGTGAGGAAAAGAGTAAAGAAACTGATGGAAAAAATTCTGCTGCCGCGGATAAGGACAACAAGTTTGTTGTCTCACGAGAGGATTTGAAAGTTGTCTTTGAGAAGTTTGGTACCGTGAAGTACGTTGATTTCAAGATTGGAGAAGAGTCGGGATATATCCGATTTGAAGAACCTGAAGGTGCTCAGAAAGCTCGTGCAGCTGCAGTTCTTTCTGAAAAGGAGGGCTTAGTTGTCAAGAATTGTATTGCTATTCTGGATCCAGTGACTGGTGAGGCGGAGAGAGAATACTGGAGCCTGCTTCGTGGTAATCAGGATAAACGCAGAGGATTTATGAATAACAGAGGAAGAGGAAGAAAGCATGGGAGAGGGGGTAAATTCAACCGTTCCCGAGAGAATGAATCTGGATCAAATCGCCCAAATAAATTTAGGAAGTTTTAA 1338 0.4253 MATASLDDETAKKVVRQVEFYFSDSNLPRDNFLKKTVSESEDGMVSLALICSFNRMRKHLKLEEVKSAEVPDDTVKAVAQALKDSALVRLSEDGSKVGRSTKLLKPEEVIEQVEIRTIAASPFQYDVKLEDVEAFFGQYAKVNSVRLPRHVGDKRVFCGTALVEFSSDEEMEKILKQSLVYAGAELELKPKKDFDVQREKELKEQEKFRPPVGVDHQSNISTEADYPIGLLIAFKLKIISDEVPSEQNNPEQQTNDAHDISKTDQQNPSEIAAEESGKNISENDENDKENGEVSEGKETEGEEKSKETDGKNSAAADKDNKFVVSREDLKVVFEKFGTVKYVDFKIGEESGYIRFEEPEGAQKARAAAVLSEKEGLVVKNCIAILDPVTGEAEREYWSLLRGNQDKRRGFMNNRGRGRKHGRGGKFNRSRENESGSNRPNKFRKF 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00935 445 SUPERFAMILY RNA-binding domain, RBD 322 414 IPR035979 GO:0003676
Viun8g00935 445 Gene3D - 282 416 IPR012677 -
Viun8g00935 445 MobiDBLite consensus disorder prediction 244 276 - -
Viun8g00935 445 CDD LA_like_plant 10 99 - -
Viun8g00935 445 PANTHER LUPUS LA PROTEIN-RELATED 11 309 IPR045180 -
Viun8g00935 445 Gene3D - 109 208 IPR012677 -
Viun8g00935 445 FunFam La protein 2 6 106 - -
Viun8g00935 445 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Viun8g00935 445 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Viun8g00935 445 PRINTS Lupus La protein signature 157 175 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Viun8g00935 445 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 201 IPR000504 GO:0003723
Viun8g00935 445 MobiDBLite consensus disorder prediction 406 445 - -
Viun8g00935 445 MobiDBLite consensus disorder prediction 244 315 - -
Viun8g00935 445 CDD RRM1_La 117 189 - -
Viun8g00935 445 SUPERFAMILY "Winged helix" DNA-binding domain 8 103 IPR036390 -
Viun8g00935 445 SMART la 8 100 IPR006630 -
Viun8g00935 445 SMART rrm1_1 117 189 IPR000504 GO:0003723
Viun8g00935 445 SMART rrm1_1 321 379 IPR000504 GO:0003723
Viun8g00935 445 MobiDBLite consensus disorder prediction 277 315 - -
Viun8g00935 445 ProSiteProfiles xRRM domain profile. 306 433 IPR014886 GO:0003723
Viun8g00935 445 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 176 IPR000504 GO:0003723
Viun8g00935 445 Gene3D - 2 104 IPR036388 -
Viun8g00935 445 Pfam La domain 14 83 IPR006630 -
Viun8g00935 445 Pfam RNA binding motif 324 416 IPR014886 GO:0003723
Viun8g00935 445 SUPERFAMILY RNA-binding domain, RBD 108 193 IPR035979 GO:0003676
Viun8g00935 445 ProSiteProfiles La-type HTH domain profile. 4 109 IPR006630 -
Viun8g00935 445 MobiDBLite consensus disorder prediction 195 211 - -
Viun8g00935 445 MobiDBLite consensus disorder prediction 426 445 - -
Viun8g00935 445 MobiDBLite consensus disorder prediction 195 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00935 Viun-Chr8 9798561 9802950 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00935 K11090 - gmx:100792984 592.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00935 8 9798561 9802950 Viun8g00935 8 9798561 9802950 ECH
Viun8g00935 8 9798561 9802950 Viun9g02862 9 37034987 37038417 PCT