Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02581 ATGGCCTTGTGCAGGTGTCTCTCCTTTTTTACTGGAAAGAAAGACAAAAACAAGAGTGCTGCTGAAGGGTCTTCAACGGGGGACCTTAAAGCTCAACTTGGCGAAATACAGCACCCGAAGATTTCATCAGAGCGTCGTGATTTGAAGCCGGCCACCCTTGATGTGACGGTACCCTTTGGTGTGCAGAAGAATTCAAGGGGAAATGTGAGGATTATGAACCATGAGAGTCCTGTGAAGACTGAAGTGGAGGAAGCTTATGAAGGAGAAGACGAGCATGAACAGTCTCCTTCCATCAAGAGGCAGCTCTCTGATTTTGATCTTCAAGTCCACCAAGCTGCTGCAAGCAAAGGAAGATGTGATCCATCAAATGAAGAGATAAAATTTGAAGACCAAGTTAACATTCAATTCGAAGACACAGAACATAAATACAGCATAAAGAGTGATGATATGATCCAAAGTGGACATGTCAGTGATCCCGGGATTGGAAAGACTGACTTTTGGGCTTCTCCGGAGCTCAAGAGATCTTGTTCTGACCTTGAAAGAAGGGATGTTCTTATGAAAACTTCTCATCTCTTTCCAACTTCCAAGTCACAGTCTTTTGAGGATTTACACGGATTATCAGCATATATTAATCTAGAAAGCCCGAGGTCTGCGATGACTCACTGCAGTGCTGATAAAGTGATGTTGAAAAGGCATTCCTCAAGTCAAGTTCTTCCTTCTAGAAGTAAAAGATTGTGGTGGAAGTTGTTCCTCTGGAGCCACAGGAATATACATAGATCAAAGTCAAGCAAATCGACACAGATACATCCTGCAATTGCTGCTTTGAGTAGTCAATGTGGGTACTCCTCCGACACCCTTGAACCAAAGCAAGGCAAGGCTTTGAGACACGAAGAATCACCCTCACCAACCTCATCTTTTGGGGAATATTTTCAGAAAAGCTGCGATGAACAAAACATTGTTAACCAAAGGTGGAGCAGATTTCAGAAAGACCATTTTGGATTTTGGCCACAAAACCAATGGGTGGCTTTCTCAACCGAATCATCCTCGCTTAGCAGAGTGGATGAGTGGGTGAAAGATCTCGAAATTCAGCAGCCACCTCCTGAGGATGATGACTTTGGTGATGACAGCATTGGAAGCATTGCATTCCCACCTTCTCCTGATGATGGTAGATCAATGGCAAGAAGCACATCTCAGTTGATTCGACATTCAGATGCCAATATTTCAAAAGAGATAATGCATGCCAATAGTCTGGTCCAGTCCCTGAACCCCGCCTCAACTGCTGCTCATATATCAGGCATTGGTATAAAGGCCATTCCCTCTCTTTCGCACTTCTTCAGTCTCCGCTCTGTCAATTTGTCAAGCAATCTTATAGCTCACATCACTCCTGGATTTCTCCCAAAGGGTATTCATACACTGAATCTGTCAAGAAACAAAATCAGCACTATTGAGGGCCTCAGAGAATTAACCCGGTTGCGGATACTTGATTTAAGTTATAATCGCATCTCAAGAATTGGACAAGGATTATCAAATTGTACCTTAGTCAAAGAGCTATATCTTGCTGGGAACAAGATAGGTGATGTTGAGGGGCTGCACAGGTTACTGAAGCTAACAGTTCTGGACTTGAGCTTTAACAAGATCGCAACCACAAAAGCATTAGGTCAGCTGGTGGCTAACTACAACTCACTTCAGGCTTTGAGTCTGCTAGGAAACCCAATTCAAAGCAACATCAGTGATGAGCAACTGCGCAAAGCAGTTAGTGGTCTTCTTCCAAAGCTTGTGTACCTGAACAAGCAATCTATAAAGACTCAAAGGGGACGAGAAATGTTCACTGATAGTGTTGCCAAAGCTGCACTTGGGAACAGCGGCCACAACTCCTACAGAAGAGTACTGAAGAAAGGTGGTGGCCAAGGAGGGTCAAGTTCCTCCGGTGTGCATAGAAGCAGTGCTAGTGTTTCCCACAAAAGCAGGCACAGGTCAAGGAGCCGAACTAAGCGTCATTAG 2001 0.4428 MALCRCLSFFTGKKDKNKSAAEGSSTGDLKAQLGEIQHPKISSERRDLKPATLDVTVPFGVQKNSRGNVRIMNHESPVKTEVEEAYEGEDEHEQSPSIKRQLSDFDLQVHQAAASKGRCDPSNEEIKFEDQVNIQFEDTEHKYSIKSDDMIQSGHVSDPGIGKTDFWASPELKRSCSDLERRDVLMKTSHLFPTSKSQSFEDLHGLSAYINLESPRSAMTHCSADKVMLKRHSSSQVLPSRSKRLWWKLFLWSHRNIHRSKSSKSTQIHPAIAALSSQCGYSSDTLEPKQGKALRHEESPSPTSSFGEYFQKSCDEQNIVNQRWSRFQKDHFGFWPQNQWVAFSTESSSLSRVDEWVKDLEIQQPPPEDDDFGDDSIGSIAFPPSPDDGRSMARSTSQLIRHSDANISKEIMHANSLVQSLNPASTAAHISGIGIKAIPSLSHFFSLRSVNLSSNLIAHITPGFLPKGIHTLNLSRNKISTIEGLRELTRLRILDLSYNRISRIGQGLSNCTLVKELYLAGNKIGDVEGLHRLLKLTVLDLSFNKIATTKALGQLVANYNSLQALSLLGNPIQSNISDEQLRKAVSGLLPKLVYLNKQSIKTQRGREMFTDSVAKAALGNSGHNSYRRVLKKGGGQGGSSSSGVHRSSASVSHKSRHRSRSRTKRH 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02581 666 SMART LRR_typ_2 533 555 IPR003591 -
Viun9g02581 666 SMART LRR_typ_2 488 511 IPR003591 -
Viun9g02581 666 SMART LRR_typ_2 444 466 IPR003591 -
Viun9g02581 666 FunFam Outer arm dynein light chain 1 protein 507 605 - -
Viun9g02581 666 SUPERFAMILY Outer arm dynein light chain 1 435 600 - -
Viun9g02581 666 MobiDBLite consensus disorder prediction 282 306 - -
Viun9g02581 666 ProSiteProfiles Leucine-rich repeat profile. 513 534 IPR001611 GO:0005515
Viun9g02581 666 MobiDBLite consensus disorder prediction 14 33 - -
Viun9g02581 666 Pfam Leucine rich repeat 446 501 IPR001611 GO:0005515
Viun9g02581 666 MobiDBLite consensus disorder prediction 78 97 - -
Viun9g02581 666 SMART LRR_sd22_2 488 510 - -
Viun9g02581 666 SMART LRR_sd22_2 533 554 - -
Viun9g02581 666 SMART LRR_sd22_2 511 532 - -
Viun9g02581 666 SMART LRR_sd22_2 466 487 - -
Viun9g02581 666 MobiDBLite consensus disorder prediction 635 649 - -
Viun9g02581 666 MobiDBLite consensus disorder prediction 650 666 - -
Viun9g02581 666 Pfam Leucine Rich repeat 511 527 IPR001611 GO:0005515
Viun9g02581 666 Pfam Leucine Rich repeat 535 546 IPR001611 GO:0005515
Viun9g02581 666 MobiDBLite consensus disorder prediction 624 666 - -
Viun9g02581 666 ProSiteProfiles Leucine-rich repeat profile. 490 512 IPR001611 GO:0005515
Viun9g02581 666 FunFam Outer arm dynein light chain 1 protein 393 506 - -
Viun9g02581 666 ProSiteProfiles Leucine-rich repeat profile. 468 489 IPR001611 GO:0005515
Viun9g02581 666 PANTHER NISCHARIN RELATED 206 652 - -
Viun9g02581 666 Gene3D Ribonuclease Inhibitor 510 605 IPR032675 -
Viun9g02581 666 Gene3D Ribonuclease Inhibitor 386 509 IPR032675 -
Viun9g02581 666 ProSiteProfiles Leucine-rich repeat profile. 535 556 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02581 Viun-Chr9 34938548 34942246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02581 493 620 Receptor kinase-like Gene Family AT5G07280 35.878 7.16e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02581 - - gmx:100813969 1019.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g02581 9 34938548 34942246 Viun9g02581 9 34938548 34942246 ECH
Viun8g01495 8 24807824 24811183 Viun9g02581 9 34938548 34942246 PCT