Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01495 ATGGCTATGTGCTTCTCTCTTTTGACTGTAAGGAAGGAGAAATACAAGGGGAGTGGAAGGTCTTCAAAGGAGAACTTTAGTACTCTACTTGCCAAACTACAATCTTCAAAAATTGCATCAGTACCAACCACTTTTGATGCCACAGTATCCGATGGTATTCCCAGAAATTCAAGTTTCAATTCGGGGGTTATGAGTCCTGATACTTGTGTGGAGGCTGAAGTACATGAGGCTTATGAAGGGGAAGATGAGGATGAAGATTCACCGAAGATCAAGAGAGAAATCTCTGATTTTCATCTCCAACATCATGAAGCTGTTGCAGACAAAGGATATGGTGCAACTGATAAAGAAATAGAGTATCCTACTTTGTATGAAAATCAAGTCACCGAAGAATTTGATGACAGAACCGATAAATACAGCCAAAAGAGCGTTGAAACAACCGAAAGTGGACACGTCAGTGATCCTGGGATTGCCAAAGCTGATTCGTGGACTTCTCCAAAGTTCAAGAGACACTTTTCTAACCTTGAAAAGTTTGATGAGCATGGTAAGAAAACTCATTATATGTCAGCTTTAAAGTCAAAGTCTTTTGAGAATTTTAAGGAATTATCAGCAATGGTTAATCTTGAAAGCCCTTGGTCAGAGAAGAGTCACTACAGTGCTGATAGAGTAGTGCTGAAAAGGCATTCTTCAAGTCAGTTACTTCCTTCTGGAAGGAAAAACCTGTGGTGGAAAATGATCCTGCGGAGCCACAGGAACATACACAGAACTTTCTCTGGGAATTCAACATTAGTTCCTGCCACGGCTGCATTAAATAGTGGGTACTCTACAGACACCCTTGAACAACCAAAACAAGGAAAGACATTGAGGCCTGTGAAATCCTCTGGTTCAATTACTGCAGAATCGTTTAACAAAAGAAGAACTGGTAAAGGTATAGATAATAAAAGGGGGAGCAGGTTTCAAAGGGACCAATGGCTTGCTTTCTCCAAAGAATCGTCCTCTTTTGCCAGAGTGGATGCATGGGTGAAAGGTCTTGAAATTCAGCAACTACTTCCTGAGGATGATTTTGATGTTGACAATGATAAAAGCATAACCTTCCCACCTTCTCCCGATACTGGTCGAACAATGATGAGAGCTACATCTCAGTTGACTTATGCAGATGCCAATGTTTCAAAACAGACTTTAACTGCCATTAGTGTAGTCCAGTCTCTAAATCCAGCTTCATCTATTGCTCACATATCTGGTATTGGTGTAAAATCCATCCCTGCTATTTCACACTTATCCAATCTCCGCTCTATCAACCTCTCAAACAATTTCATAGCTCACATCTCACCAGGATTTCTACCAAAGGGTATTCAAACACTTAACTTGTCAAGAAACAAGATCAACACTCTTGACGGTCTCAGAGAATTGACCAAGTTGCGGGTAATTGACCTGAGTTACAACCGCATCTCGAGAATTGGACAAGGTTTGTCAAGTTGCACACTTGTCAAAGAACTGTATCTTGTGGGAAACAAGATAAGTGATGCTGAAGGGCTACACAGGCTATTGAAGCTAACAGTTCTAGATTTGAGCTTCAACAAGATCACAACAACAAAAGCATTAGGCCAGCTTGTGGCTAACTACAACTCACTTAAGGCTCTTAATCTGCTAGGAAATCCAATTGAAAGAAACATCAGCCATGGCCAGCTGAGTAAAGCAGTCTCTGGTCTTCTTCCAAAGTTGGTGTACCTGAACAAGCAACCCCTCAAGGCTCATAGAACACGCGAAATATTGAGTGACAGTGTTGCCAGAGCTGCCCTTGGGAACAGCACGATAAGCTGTGACAAAAGATCAATAAGAAGACTTAGTCATGGTGGATCAAGTCTTTCCAAAGGGTATAGAAGAAGTGCAAGTGCTTCTCACAAAAGCACGAATCGAACAAGGAGGTGA 1926 0.4148 MAMCFSLLTVRKEKYKGSGRSSKENFSTLLAKLQSSKIASVPTTFDATVSDGIPRNSSFNSGVMSPDTCVEAEVHEAYEGEDEDEDSPKIKREISDFHLQHHEAVADKGYGATDKEIEYPTLYENQVTEEFDDRTDKYSQKSVETTESGHVSDPGIAKADSWTSPKFKRHFSNLEKFDEHGKKTHYMSALKSKSFENFKELSAMVNLESPWSEKSHYSADRVVLKRHSSSQLLPSGRKNLWWKMILRSHRNIHRTFSGNSTLVPATAALNSGYSTDTLEQPKQGKTLRPVKSSGSITAESFNKRRTGKGIDNKRGSRFQRDQWLAFSKESSSFARVDAWVKGLEIQQLLPEDDFDVDNDKSITFPPSPDTGRTMMRATSQLTYADANVSKQTLTAISVVQSLNPASSIAHISGIGVKSIPAISHLSNLRSINLSNNFIAHISPGFLPKGIQTLNLSRNKINTLDGLRELTKLRVIDLSYNRISRIGQGLSSCTLVKELYLVGNKISDAEGLHRLLKLTVLDLSFNKITTTKALGQLVANYNSLKALNLLGNPIERNISHGQLSKAVSGLLPKLVYLNKQPLKAHRTREILSDSVARAALGNSTISCDKRSIRRLSHGGSSLSKGYRRSASASHKSTNRTRR 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01495 641 ProSiteProfiles Leucine-rich repeat profile. 427 447 IPR001611 GO:0005515
Viun8g01495 641 FunFam Outer arm dynein light chain 1 protein 374 487 - -
Viun8g01495 641 Gene3D Ribonuclease Inhibitor 491 586 IPR032675 -
Viun8g01495 641 ProSiteProfiles Leucine-rich repeat profile. 449 470 IPR001611 GO:0005515
Viun8g01495 641 MobiDBLite consensus disorder prediction 615 641 - -
Viun8g01495 641 FunFam Outer arm dynein light chain 1 protein 488 586 - -
Viun8g01495 641 Pfam Leucine Rich Repeat 427 448 IPR001611 GO:0005515
Viun8g01495 641 Gene3D Ribonuclease Inhibitor 358 490 IPR032675 -
Viun8g01495 641 ProSiteProfiles Leucine-rich repeat profile. 516 537 IPR001611 GO:0005515
Viun8g01495 641 SMART LRR_sd22_2 514 535 - -
Viun8g01495 641 SMART LRR_sd22_2 492 513 - -
Viun8g01495 641 SMART LRR_sd22_2 469 491 - -
Viun8g01495 641 SMART LRR_sd22_2 447 468 - -
Viun8g01495 641 SMART LRR_typ_2 514 536 IPR003591 -
Viun8g01495 641 SMART LRR_typ_2 469 492 IPR003591 -
Viun8g01495 641 SMART LRR_typ_2 425 447 IPR003591 -
Viun8g01495 641 SUPERFAMILY Outer arm dynein light chain 1 419 578 - -
Viun8g01495 641 PANTHER NISCHARIN RELATED 204 635 - -
Viun8g01495 641 Pfam Leucine rich repeat 451 505 IPR001611 GO:0005515
Viun8g01495 641 ProSiteProfiles Leucine-rich repeat profile. 471 493 IPR001611 GO:0005515
Viun8g01495 641 MobiDBLite consensus disorder prediction 615 632 - -
Viun8g01495 641 MobiDBLite consensus disorder prediction 274 314 - -
Viun8g01495 641 MobiDBLite consensus disorder prediction 274 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01495 Viun-Chr8 24807824 24811183 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01495 420 581 Receptor kinase-like Gene Family AT5G56040 31.667 2.28e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01495 - - gmx:100801034 942.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g01495 8 24807824 24811183 Viun8g01495 8 24807824 24811183 ECH
Viun8g01495 8 24807824 24811183 Viun9g02581 9 34938548 34942246 PCT