Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Viun9g02575 | ATGAGAGGTGGTGGATGCAGCATAGTTTGGTTCAGAAGAGATCTGAGGGTGGAAGACAACCCTGCACTGGCGGCCGGAGTAAGAGCCGGAGCTGTGGTTGCAGTTTTCATCTGGGCACCGGAAGAAGAAGGCCAATACTACCCCGGCAGAGTCTCCAGGTGGTGGCTCAAACAAAGCTTGGTTCATCTTGATTCTTCTCTCAGGAATCTTGGCACTCGTCTCATCACTAAGCGATCCACTGATACTGTTTCTTCTCTCCTTGACCTTGTTAAATCCACTGGAGCTACTCAACTCTTTTTTAATCATTTATACGATCCCCTGTCGCTTGTAAGGGATCACCGAGCCAAAGAGGTTCTGAATTCTCAGGGCATAACAGTACGTTCCTTCAACGCGGATTTACTGTATGAACCGTGGGATGTGAATGATGTCCATGCTCGACCCTTCACAACTTTTGCTGCTTTTTGGGACAGATGTCTTACCATGCCTTATGACCCAGACTCACCTCTTCTTCCTCCTAAAAGGATAATTCCAGGTGATGTGTCGAGATGCCCAAGTGACACATTGGTGTTTGAAGATGAATCAGAGAAGGCAAGCAATGCACTTCTTGCGAGAGCATGGTCACCGGGGTGGAGCAATGCTAACAAGGCATTGACAGCATTCATAAATGGTCCACTGATAGAGTACTCAATAAATCGCAGAAAGGCTGACAGTGCCACAACCTCACTTCTCTCACCCCATTTGCATTTTGGTGAGCTGAGTGTGAAGAAGGTCTTCCATCTTGTCCGCATCAAACAACTTCTGTGGGCCAACGAAGGAAACAAGGCCAGTGAAGAGAGTGTGAACTTGTTCCTTAAATCTATTGGTCTCAGAGAATATTCGAGGTACATTAGTTTCAACCACCCCTACAGTCATGAAAGGCCTCTTCTGGGCCACCTTAAGTTCTTTCCTTGGGTTGTAAATGAGGCTTATTTTAAGGCATGGAGACAAGGCAGAACTGGTTACCCTTTGGTCGATGCAGGGATGAGGGAGTTGTGGGCCACTGGTTGGCTGCATGATCGGATACGTGTTGTAGTTTCCAGTTTCTTTGTCAAGGTTCTGCAGCTTCCTTGGAGATGGGGAATGAAATATTTCTGGGACACCCTCTTGGATGCAGATCTTGAAAGTGATGCTCTTGGTTGGCAATACATATCTGGCACACTCCCTGATGGTCGTCAATTTGACCGAATAGATCATCCACAGTTTGAGGGCTATAAATTCGACCCAAATGGAGAATATGTACGACGGTGGCTTCCAGAACTTGCAAGGTTACCTACTGAGTGGATTCATCATCCTTGGAATGCACCAGAATTCGTGCTCCAAGCTTCTGGAATTGAGCTAGGAACCAACTATCCTCTTCCGATTGTGGGAATAGATGCAGCAAAAACTCGATTACAAGAGGCACTATCGGAAATGTGGCAACTAGAGGCTGCTTCAAGAGCTGCAATGGAAAACGGAACTGAGGAAGGACTTGGAGACTCCTCTGAATCAATCCCTGCTGCTTTTCCACAAGACATGCAAATGGAGGAAACTCATGAACCTGTTAGGAACAATCCCTTTCCTGTTGGTCGGCGTTACCTGGATCAGATGGTTCCAAGCATCACTTCCACCCTTCTCAGAATAGAAGAGGAAGAAACAACTTCTGATCTCCGAAACTCAGCAGAAGAGAGCAGCAGAGCTGAAGTGCCTATAAATGTAGATGCACAACAGAATGCAGGAGTTATATCGAACGAACGGATGTTGCAGAATGCTCACAGGAATACACAAGTACAAAACAATACTACAATGGAACTGAGAAACGTGGCCGAAGATTCTGGCGTAGAATCTTCAAGTGGTACAAGGAGAGAACGCGATGGAGGTATAGTTCCAGTATGGTCTCCCCCAGCTTCCAGTTACTCAGAACAATTTGTAGGAGATGAAAATGGTATTACAAGTGGTTCCTCGTACTTGCAAAGGCATCCTCGGTCTCACCAATTACTGAATTGTAGGCAGCTACCTCAGACCGGGTAA | 2046 | 0.4648 | MRGGGCSIVWFRRDLRVEDNPALAAGVRAGAVVAVFIWAPEEEGQYYPGRVSRWWLKQSLVHLDSSLRNLGTRLITKRSTDTVSSLLDLVKSTGATQLFFNHLYDPLSLVRDHRAKEVLNSQGITVRSFNADLLYEPWDVNDVHARPFTTFAAFWDRCLTMPYDPDSPLLPPKRIIPGDVSRCPSDTLVFEDESEKASNALLARAWSPGWSNANKALTAFINGPLIEYSINRRKADSATTSLLSPHLHFGELSVKKVFHLVRIKQLLWANEGNKASEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWVVNEAYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGRQFDRIDHPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPEFVLQASGIELGTNYPLPIVGIDAAKTRLQEALSEMWQLEAASRAAMENGTEEGLGDSSESIPAAFPQDMQMEETHEPVRNNPFPVGRRYLDQMVPSITSTLLRIEEEETTSDLRNSAEESSRAEVPINVDAQQNAGVISNERMLQNAHRNTQVQNNTTMELRNVAEDSGVESSSGTRRERDGGIVPVWSPPASSYSEQFVGDENGITSGSSYLQRHPRSHQLLNCRQLPQTG | 681 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Viun9g02575 | 681 | Pfam | FAD binding domain of DNA photolyase | 283 | 481 | IPR005101 | - | |
| Viun9g02575 | 681 | FunFam | Cryptochrome 1 | 8 | 149 | - | - | |
| Viun9g02575 | 681 | SUPERFAMILY | Cryptochrome/photolyase, N-terminal domain | 7 | 178 | IPR036155 | - | |
| Viun9g02575 | 681 | MobiDBLite | consensus disorder prediction | 602 | 620 | - | - | |
| Viun9g02575 | 681 | Coils | Coil | 470 | 490 | - | - | |
| Viun9g02575 | 681 | PANTHER | CRYPTOCHROME | 6 | 490 | IPR002081 | - | |
| Viun9g02575 | 681 | Pfam | DNA photolyase | 7 | 161 | IPR006050 | - | |
| Viun9g02575 | 681 | NCBIfam | cryptochrome photoreceptor | 6 | 482 | IPR014134 | GO:0009785|GO:0009882 | |
| Viun9g02575 | 681 | Gene3D | DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 | 301 | 502 | - | - | |
| Viun9g02575 | 681 | MobiDBLite | consensus disorder prediction | 640 | 667 | - | - | |
| Viun9g02575 | 681 | FunFam | Deoxyribodipyrimidine photo-lyase | 301 | 490 | - | - | |
| Viun9g02575 | 681 | ProSiteProfiles | Photolyase/cryptochrome alpha/beta domain profile. | 5 | 134 | IPR006050 | - | |
| Viun9g02575 | 681 | MobiDBLite | consensus disorder prediction | 602 | 667 | - | - | |
| Viun9g02575 | 681 | Pfam | Blue/Ultraviolet sensing protein C terminal | 511 | 626 | IPR020978 | - | |
| Viun9g02575 | 681 | SUPERFAMILY | Cryptochrome/photolyase FAD-binding domain | 194 | 488 | IPR036134 | - | |
| Viun9g02575 | 681 | MobiDBLite | consensus disorder prediction | 554 | 568 | - | - | |
| Viun9g02575 | 681 | Gene3D | HUPs | 8 | 206 | IPR014729 | - | |
| Viun9g02575 | 681 | ProSitePatterns | DNA photolyases class 1 signature 2. | 352 | 371 | IPR018394 | - | |
| Viun9g02575 | 681 | MobiDBLite | consensus disorder prediction | 552 | 580 | - | - | |
| Viun9g02575 | 681 | PRINTS | DNA photolyase signature | 332 | 348 | IPR002081 | - | |
| Viun9g02575 | 681 | PRINTS | DNA photolyase signature | 352 | 370 | IPR002081 | - | |
| Viun9g02575 | 681 | PRINTS | DNA photolyase signature | 391 | 405 | IPR002081 | - | |
| Viun9g02575 | 681 | ProSitePatterns | DNA photolyases class 1 signature 1. | 332 | 344 | IPR018394 | - | |
| Viun9g02575 | 681 | Gene3D | - | 134 | 293 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Viun9g02575 | Viun-Chr9 | 34883852 | 34889614 | Dispersed/Tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Viun9g02575 | K12118 | - | gmx:100797839 | 1274.23 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Viun9g02575 | 9 | 34883852 | 34889614 | Viun9g02575 | 9 | 34883852 | 34889614 | ECH | |
| Viun8g01486 | 8 | 24653734 | 24659326 | Viun9g02575 | 9 | 34883852 | 34889614 | PCT |