Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01486 ATGTCAGGAGGAGGATGCAGCATAGTGTGGTTTAGGAGAGATCTGAGGGTAGAGGATAATCCTGCACTTGCTGCAGGAGTGAGAGCAGGAGCTGTGGTTGCTGTTTTCATTTGGGCTCCAGAAGAAGAGGGTCAATACTACCCTGGGAGGGTCTCTAGGTGGTGGCTCAAACAAAGTTTGGCTCACCTTGATTCCTCTTTGAGAAGCCTTGGCACTCCCCTAATCACCAAGCGTTCCACTAATAGTGTTTCTTCTCTATTGGAGGTTGTTAAGTCCACTGGGGCTACTCAACTCTTTTTCAACCATTTATATGATCCATTGTCACTTGTGAGGGATCACCGAACAAAGGAAGTTCTGACTGCACAGGGCATTACCGTACGTTCATTCAACTCAGACTTATTGTATGAACCATGGGATGTGAATGACGCTCATGGCCAACCATTCACAACTTTTTCTGCTTTTTGGGAAAGATGCCTCAGCATGCCTTATGACCCACAAGCACCTCTTCTCCCACCTAAAAGAATTATTCCAGGTGATGCTTCAAGGTGCCCTTGTGATACATTGGTGTTTGAAGACGATTTAGAGAAGGCAAGCAATGCTCTTCTTTCTCGAGCATGGTCACCGGGGTGGAGCAATGCTGACAAGGCATTGACAGCATTCATAAATGGTCCTCTGATTGAATACTCAAAGAATCGTAGGAAGGCTGATAGTGCCACAACCTCATTTCTCTCTCCACATCTGCACTTTGGTGAGGTGAGTGTAAAGAAAGTGTTTCATCTTGTCCGCATTAAGCAAGTGTTTTGGGCCAATGAAGGAAACAAGGCTGGTGAAGAGAGTGTGAACTTGTTTCTCAAGTCTATTGGTCTTAGAGAGTATTCGAGGTACATCAGTTTCAACCACCCCTACAGTCATGAGAGGCCCCTTCTGGGCCACCTCAAGTTTTTCCCTTGGGTGGTGAATGAAGGGTACTTCAAGGCTTGGAGACAAGGCAGAACAGGGTACCCTTTGGTGGATGCTGGAATGAGAGAGTTGTGGGCAACTGGTTGGTTGCATGATCGGATACGTGTTGTGGTTTCAAGTTTCTTTGTGAAGGTGCTGCAGCTTCCTTGGAGATGGGGAATGAAGTATTTCTGGGATACCCTTTTGGATGCAGATCTTGAGAGTGATGCTCTTGGTTGGCAGTACATATCTGGTACTCTCCCTGATGGTCGCGAATTTGATCGAATAGATAATCCACAGTTTGAGGGGTATAAATGTGACCCAAATGGAGAATATGTTCGACGCTGGCTTCCAGAACTTGCTAGATTACCAACTGAATGGATACACCATCCGTGGAATGCACCAGAGTATGTACTACAAGCTGCTGGAATTGAACTTGGTTCAAATTATCCTCTTCCCATTGTGGGAATAGATGCTGCAAAAGTCAGACTGCAGGAAGCACTCATACAAATGTGGCAACAAGAAGCAGCTTCAAGAGCTGCAATTGAAAATGGAACCGAGGAAGGTCTTGGAGACTCATCTGAATCAGCCCCTATTGCTTTTCCTCAAGACACACACATGGAAGAAAGACCTGTTGAACCTGTTAGGAACAACCCACCTCATGGTACACGGCGCTACGAGGATCAGATGGTCCCAAGTATGACTTCTTCCCATGTGAGAGTGGAAGAGGAAGAAACTTCCTCAGACCTTCGAAACTCAGCAGCAGACAACAGAGCCGAAGTTCCTACAAATGTGACCACAGAGCAAAATGCAAGAGAGACAGTGAATCATGGAGGGCTGCCGAATGTAAATAGAAACACTCGAGTACAGAATAATGCTACTGAAATGTGGCTGAGAAATGCGGCTGAAGATTCCACAGCAGAATCGTCAAGTAGTACTAGGAGAGAAAGGGATGGGGGTGTGGTTCCGGTTTGGTCTCCCCCAGCATCTAACTTCTCGGAACAATTTGTAGATGATGAAAATGGTATTGGAGCCAGTTCATCATACTTGCAGAGGCAGCATCCTCAGTCCCATCAATTGATGAACTGGACGCGGCTACCTCAGACTGGGTAA 2052 0.4635 MSGGGCSIVWFRRDLRVEDNPALAAGVRAGAVVAVFIWAPEEEGQYYPGRVSRWWLKQSLAHLDSSLRSLGTPLITKRSTNSVSSLLEVVKSTGATQLFFNHLYDPLSLVRDHRTKEVLTAQGITVRSFNSDLLYEPWDVNDAHGQPFTTFSAFWERCLSMPYDPQAPLLPPKRIIPGDASRCPCDTLVFEDDLEKASNALLSRAWSPGWSNADKALTAFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNKAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPEYVLQAAGIELGSNYPLPIVGIDAAKVRLQEALIQMWQQEAASRAAIENGTEEGLGDSSESAPIAFPQDTHMEERPVEPVRNNPPHGTRRYEDQMVPSMTSSHVRVEEEETSSDLRNSAADNRAEVPTNVTTEQNARETVNHGGLPNVNRNTRVQNNATEMWLRNAAEDSTAESSSSTRRERDGGVVPVWSPPASNFSEQFVDDENGIGASSSYLQRQHPQSHQLMNWTRLPQTG 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01486 683 MobiDBLite consensus disorder prediction 499 601 - -
Viun8g01486 683 Pfam FAD binding domain of DNA photolyase 283 480 IPR005101 -
Viun8g01486 683 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 192 488 IPR036134 -
Viun8g01486 683 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 301 502 - -
Viun8g01486 683 Pfam Blue/Ultraviolet sensing protein C terminal 510 627 IPR020978 -
Viun8g01486 683 PANTHER CRYPTOCHROME 6 490 IPR002081 -
Viun8g01486 683 Gene3D HUPs 8 206 IPR014729 -
Viun8g01486 683 FunFam Deoxyribodipyrimidine photo-lyase 301 490 - -
Viun8g01486 683 MobiDBLite consensus disorder prediction 641 683 - -
Viun8g01486 683 MobiDBLite consensus disorder prediction 519 536 - -
Viun8g01486 683 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 5 134 IPR006050 -
Viun8g01486 683 MobiDBLite consensus disorder prediction 613 683 - -
Viun8g01486 683 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 178 IPR036155 -
Viun8g01486 683 ProSitePatterns DNA photolyases class 1 signature 2. 352 371 IPR018394 -
Viun8g01486 683 Gene3D - 134 293 - -
Viun8g01486 683 Pfam DNA photolyase 7 163 IPR006050 -
Viun8g01486 683 MobiDBLite consensus disorder prediction 565 601 - -
Viun8g01486 683 PRINTS DNA photolyase signature 352 370 IPR002081 -
Viun8g01486 683 PRINTS DNA photolyase signature 332 348 IPR002081 -
Viun8g01486 683 PRINTS DNA photolyase signature 391 405 IPR002081 -
Viun8g01486 683 PRINTS DNA photolyase signature 143 159 IPR002081 -
Viun8g01486 683 ProSitePatterns DNA photolyases class 1 signature 1. 332 344 IPR018394 -
Viun8g01486 683 FunFam Cryptochrome 1 8 148 - -
Viun8g01486 683 NCBIfam cryptochrome photoreceptor 6 481 IPR014134 GO:0009785|GO:0009882
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01486 Viun-Chr8 24653734 24659326 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01486 K12118 - gmx:100815428 1311.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g01486 8 24653734 24659326 Viun8g01486 8 24653734 24659326 ECH
Viun8g01486 8 24653734 24659326 Viun9g02575 9 34883852 34889614 PCT