Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02565 ATGGACGCACACATCAGTCTGAAGATGTCAGAGGACAACAAGCGTACCGCAGCAGCAGAGGAAGGAGGAGAAACCAGGTTTGTTGGGATTCCCAATGCACCCAATCCCACACCCCTACCCTGTCTCCGCGTCCTTCACCCTGACCACGTGGCCGTTGGGTCCCCCATTACCAGGGTTCCTCCATATTCAGCACCACCTCCATCTCCCAAATTCTGGGTGGACCATGATTCCTCACTCATTTCCGATTTCTCCAAAATGAATCTCCTCGATCAAACCCAAACCGATGTGGACCCCTGTCCTTATTTTAATCAAACAGGAACCCTTCCAAACCCTTATGAATCTTGTTTCAATGAAACAGGAAACCTCCCATACCATCACCATGTCGAAAATGCCCGTTTGTTCAGTGAACAAGGAACTCTCCCCTATCATGTTAACAATGCTGGTTTGTTCAACGGGACGGAGAACCTTCCTTATCACCACCATGTTAACAACGCCGGGTTGTTCACTGAAACCGGAACCCTCCTCCCCTATCACCACCATGTTAACAACGCCGGGCTGTTCGATAAAGGTCACACTTTTGACACCCCAGATGATCACGTTAACCATGTGTATCATCACCCCGTGGAGCAGAGGAGGAATCAGTTACAGGCCACGAGTAGTGGCAACTATCCCACTTTTCGTGATCGTTATATGGCTCCACATTCTTCCGGAGGGTTCAACAGCCACGTCAGGTTATCTCCTATTGCGGCTATGAATTGCAATGTTAATAACCCTTCGCATTATTATGTTGCAGCAGCGAAAGAGATCAAGACTGAACCTCCTCACTTTCTGCCTCCGAGGAGAGTGGGGGGAGACCCTGCGGCTTTTAGGTGTGACAATAGCATTATCTTGCAAGGGAGAGATTCAAGGCACTGCTTTGAGAATGGGTATGGCTCTTCTTATAGAAGGGGTCCTCCCCGTGACGAGTTTTGTGTGAGTGGCGGTGTTTCCAAGAACTTTTTACCTGGTGGTCCCTCTGGTCAAAACGCTGGGGAATTCTCTCTTCCCATGCCACTGGATTATTATTCTGTGCCGGACTCTCAGCGTTACATTTACAACCTGGCAAAGGATCAGAATGGTTGTCGTTTTCTGCAGCGGAAGGTTGACGAGGGAAGCTTCGAAGATATGTGTATTGTATTTGAGGGAATCATCGGGAGTGTTGTTGAACTTATGGTGGATTCTTTCGGGAATTATCTGGTGCAGAAGTTGCTCGATGTTTGCACCGATCATCAACGTCTGCAGATTGTGCTCATGTTGACTAATCGACCAGGCCAGCTCGTTAGAATCTCTTTGAATACTCACGGCACGCGCGTGGTGCAGAAGTTGATTGAGACCCTCGATTCCGATGATCAGATTTCATTGGTCAAGTCTGCCATTCAACCGGGTTTTCTTGATCTTATTAAGGATTTGAATGGAAATCACGTCATTCAACGCTGCTTGCAATGCTTCAGCTCTCAAGATAACCAGTTTATCTTTGATGCTTCTGTGAAGTTTTGTGTTGAAATAGCTACTCATCAGCATGGATGCTGTGTACTGCAACGCTGTATTTATTACTCTATGGGTAAAAATCGAGATAGGCTGATCTCAGAAATATGCAAGCATGGACTTCTCCTCGCCCAGGATCCATTTGGAAACTATGTTGTTCAATATATTATAGAGACTGATACTCCAACTGCCGTAGCCAAAATGCTTGGTCAGTTTAAAGGGAATTATGTACATTTGTCTACTCAGAAATTCAGCAGTCATGTGGTTGAAAAATGTCTCAGAAATGTTGGAGATACGAGGTCCAGGATAGTTCGAGAATTGCTGGCTGCCCCTAATTTTGAACGACTTCTGCAAGATCCTTATGCCAATTATGTCATTCAATCTGCTCTCACCTTCACCAAGGGCCTTCTGCATGCTTCTTTGGTTGATGCAATTCGCAATTACAAAATGTTGCGCTCCAGTCCTTTTTGCAAGAGGATTTTCTCGGGAAATTTGCTGAGGAAGTGA 2031 0.4623 MDAHISLKMSEDNKRTAAAEEGGETRFVGIPNAPNPTPLPCLRVLHPDHVAVGSPITRVPPYSAPPPSPKFWVDHDSSLISDFSKMNLLDQTQTDVDPCPYFNQTGTLPNPYESCFNETGNLPYHHHVENARLFSEQGTLPYHVNNAGLFNGTENLPYHHHVNNAGLFTETGTLLPYHHHVNNAGLFDKGHTFDTPDDHVNHVYHHPVEQRRNQLQATSSGNYPTFRDRYMAPHSSGGFNSHVRLSPIAAMNCNVNNPSHYYVAAAKEIKTEPPHFLPPRRVGGDPAAFRCDNSIILQGRDSRHCFENGYGSSYRRGPPRDEFCVSGGVSKNFLPGGPSGQNAGEFSLPMPLDYYSVPDSQRYIYNLAKDQNGCRFLQRKVDEGSFEDMCIVFEGIIGSVVELMVDSFGNYLVQKLLDVCTDHQRLQIVLMLTNRPGQLVRISLNTHGTRVVQKLIETLDSDDQISLVKSAIQPGFLDLIKDLNGNHVIQRCLQCFSSQDNQFIFDASVKFCVEIATHQHGCCVLQRCIYYSMGKNRDRLISEICKHGLLLAQDPFGNYVVQYIIETDTPTAVAKMLGQFKGNYVHLSTQKFSSHVVEKCLRNVGDTRSRIVRELLAAPNFERLLQDPYANYVIQSALTFTKGLLHASLVDAIRNYKMLRSSPFCKRIFSGNLLRK 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02565 676 ProSiteProfiles Pumilio RNA-binding repeat profile. 471 506 IPR001313 GO:0003723
Viun9g02565 676 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 204 669 - -
Viun9g02565 676 CDD Pumilio 364 670 IPR033712 GO:0003723
Viun9g02565 676 Gene3D - 352 672 IPR011989 -
Viun9g02565 676 ProSiteProfiles Pumilio RNA-binding repeat profile. 507 542 IPR001313 GO:0003723
Viun9g02565 676 ProSiteProfiles Pumilio RNA-binding repeat profile. 614 651 IPR001313 GO:0003723
Viun9g02565 676 MobiDBLite consensus disorder prediction 1 32 - -
Viun9g02565 676 ProSiteProfiles Pumilio RNA-binding repeat profile. 543 578 IPR001313 GO:0003723
Viun9g02565 676 ProSiteProfiles Pumilio RNA-binding repeat profile. 395 431 IPR001313 GO:0003723
Viun9g02565 676 SMART pum_5 543 578 IPR001313 GO:0003723
Viun9g02565 676 SMART pum_5 471 506 IPR001313 GO:0003723
Viun9g02565 676 SMART pum_5 616 651 IPR001313 GO:0003723
Viun9g02565 676 SMART pum_5 359 394 IPR001313 GO:0003723
Viun9g02565 676 SMART pum_5 579 613 IPR001313 GO:0003723
Viun9g02565 676 SMART pum_5 395 430 IPR001313 GO:0003723
Viun9g02565 676 SMART pum_5 434 469 IPR001313 GO:0003723
Viun9g02565 676 SMART pum_5 507 542 IPR001313 GO:0003723
Viun9g02565 676 ProSiteProfiles Pumilio RNA-binding repeat profile. 434 469 IPR001313 GO:0003723
Viun9g02565 676 MobiDBLite consensus disorder prediction 1 21 - -
Viun9g02565 676 FunFam Pumilio homolog 9 350 676 - -
Viun9g02565 676 Pfam Pumilio-family RNA binding repeat 550 571 IPR001313 GO:0003723
Viun9g02565 676 Pfam Pumilio-family RNA binding repeat 626 640 IPR001313 GO:0003723
Viun9g02565 676 Pfam Pumilio-family RNA binding repeat 400 429 IPR001313 GO:0003723
Viun9g02565 676 Pfam Pumilio-family RNA binding repeat 438 468 IPR001313 GO:0003723
Viun9g02565 676 Pfam Pumilio-family RNA binding repeat 583 616 IPR001313 GO:0003723
Viun9g02565 676 Pfam Pumilio-family RNA binding repeat 512 545 IPR001313 GO:0003723
Viun9g02565 676 Pfam Pumilio-family RNA binding repeat 476 506 IPR001313 GO:0003723
Viun9g02565 676 Pfam Pumilio-family RNA binding repeat 364 396 IPR001313 GO:0003723
Viun9g02565 676 SUPERFAMILY ARM repeat 361 669 IPR016024 -
Viun9g02565 676 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 335 676 IPR033133 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02565 Viun-Chr9 34762702 34765455 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02565 - - pvu:PHAVU_009G030400g 1188.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g02565 9 34762702 34765455 Viun9g02565 9 34762702 34765455 ECH
Viun8g01474 8 24175052 24178808 Viun9g02565 9 34762702 34765455 PCT