Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01474 ATGGGTTTCCTTAACCTTCACCGTGCCAACGTCACGCCACAACCTTCCACTGCTCCCACCAACACCTTTCCGATGTGGGACGAGAACAACATGATCAACCACGACCATGATGTCGATGTGTTGCTGTCTAATGATTTTGCTAGAATGGCTGTTTTTGGTGAACAAGGGGATGGTGGTAACAAAACTAGAGGATATGGTGTTGATGTTATGGACTCATCGTACACACATGCATTCTCACACTCACACTCAAACCCACACTCACTCTCACTCTCACTCTCACACACACCTAGTAGTTCTTTGGATGGATACACACATGTTGGTGAAGAAAGGGTTGCCCCATCGTCTGGTTGGGGTGTGAGGGCTTCTTCTGATGATGTGAAGGGACACACTTTCGGATCTCCAATGGAGTTTAATCAAAGGAGGAACACTTGCTATAGCAATCTTCAAATGCAGAATCCGTTTCATGGTAGAGGGTCATTTGCAATGGATTGGGACATGAGGAATCCCTTTATGCTCTCTCAAAGTCACCCCAAGCTTACTACGAATACGAATATGAACACTCCATCGCCTCATTTTTTCCCGGCAGTGAAAGAAATTGCACCGACGAGGGTGATCGTAGCCCCCAGTGCTGAATTTTCGCATTCTAGAGGGGACCCTGTGGCCTTTCAATGTGATGGTGGATTTATCATGCAGCAAGAGAGGGAGGTAAAGTGGTGTGTTGGAGGAAAAGGGTGCAATAATTCTTTGAGGGCTTTACCTTCGCCAGCTCAAGCAGTGCCTGATGAAGTTCCTCAATTCATTTCTTCTCGTGTTCCTATCAGACATGAAAAGAATGGCATTCTTTCAAATGACGTTTCTCTTTCACCGCGGCCATTGTTGTTCAATTTTGGTCCTTTGGTTAGGTTCCAAGGTTACATTTACCACCTGGCCAAGGATCAGAATGGTTGTCGCTTCCTACAGAAGATGGTTGATGAGGGCACCTCTGAAGATGCACAAATAGTGTTTAACGGAGTTATAGATGATGTTGTTGAGCTTATGATGGACCCTTTTGGGAATTACCTCGTGCAAAAGCTGATTGATGTGTGTGCTGAAGATGAAAGATTGCATATTGTGTCAATGTTGACTAAAGAACCAGGGCAACTACTCAAAACCTCTTTCAATACCCACGGGACTCGGGTGGTTCAGAAATTGATTGCTACTGTGAACTCTAGAAATCAAATTGCATTGCTGAGGTCTGCCATTCAACCTGATTTTCTTGATCTTGTCAAGGATCTCAATGGAAATCATGTTATACAACGTTGCTTGCAATACTTCAGTTGTAAAGATAACGAGTTTATTTTTGATGCTGCTACAAAATTCTGTGTTGACATAGCTACTCATGAACATGGGTGTTGTGTACTACAACGTTGCATTGATTACTCCACCGGAAAGTACCAAGATAAGCTGATAAAGGAAATATGCAGACATGGGCTTATTCTTGCTCAAGATCCATTTGGAAATTACGTTGTTCAGTATATTATAGAGATGGAGATCCCAAGTGCCTCATCGAAGCTGCATTCCCAGTTCAAAGGAAACTACGTAAACCTTTCCATGCAAAAGTTTAGCAGTCACGTAGTTGAAAAATGCCTCGTGCATATTGCAGAGAGCAGGTCCAGAATAGTCCAAGAGATGTTATCTTATCCTCACTTTGAGCGCTTCCTACCAGACCCATATGCCAACTATGTTGTTCAACGTGCTCTCGGAGTAACCAAGGGTTCTCTGCATACATCTCTGGTGGAAGCAGTTCGACCCCACAAAATCTTGCGCACCAACCCTTATTGCAAAAGGATTTTCTCAAGGAACCTACTTAATAAGTGA 1857 0.4367 MGFLNLHRANVTPQPSTAPTNTFPMWDENNMINHDHDVDVLLSNDFARMAVFGEQGDGGNKTRGYGVDVMDSSYTHAFSHSHSNPHSLSLSLSHTPSSSLDGYTHVGEERVAPSSGWGVRASSDDVKGHTFGSPMEFNQRRNTCYSNLQMQNPFHGRGSFAMDWDMRNPFMLSQSHPKLTTNTNMNTPSPHFFPAVKEIAPTRVIVAPSAEFSHSRGDPVAFQCDGGFIMQQEREVKWCVGGKGCNNSLRALPSPAQAVPDEVPQFISSRVPIRHEKNGILSNDVSLSPRPLLFNFGPLVRFQGYIYHLAKDQNGCRFLQKMVDEGTSEDAQIVFNGVIDDVVELMMDPFGNYLVQKLIDVCAEDERLHIVSMLTKEPGQLLKTSFNTHGTRVVQKLIATVNSRNQIALLRSAIQPDFLDLVKDLNGNHVIQRCLQYFSCKDNEFIFDAATKFCVDIATHEHGCCVLQRCIDYSTGKYQDKLIKEICRHGLILAQDPFGNYVVQYIIEMEIPSASSKLHSQFKGNYVNLSMQKFSSHVVEKCLVHIAESRSRIVQEMLSYPHFERFLPDPYANYVVQRALGVTKGSLHTSLVEAVRPHKILRTNPYCKRIFSRNLLNK 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01474 618 CDD Pumilio 304 613 IPR033712 GO:0003723
Viun8g01474 618 SUPERFAMILY ARM repeat 302 612 IPR016024 -
Viun8g01474 618 ProSiteProfiles Pumilio RNA-binding repeat profile. 556 593 IPR001313 GO:0003723
Viun8g01474 618 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 54 613 - -
Viun8g01474 618 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 276 618 IPR033133 GO:0003723
Viun8g01474 618 ProSiteProfiles Pumilio RNA-binding repeat profile. 373 411 IPR001313 GO:0003723
Viun8g01474 618 ProSiteProfiles Pumilio RNA-binding repeat profile. 449 484 IPR001313 GO:0003723
Viun8g01474 618 ProSiteProfiles Pumilio RNA-binding repeat profile. 337 372 IPR001313 GO:0003723
Viun8g01474 618 Gene3D - 296 616 IPR011989 -
Viun8g01474 618 ProSiteProfiles Pumilio RNA-binding repeat profile. 301 336 IPR001313 GO:0003723
Viun8g01474 618 ProSiteProfiles Pumilio RNA-binding repeat profile. 413 448 IPR001313 GO:0003723
Viun8g01474 618 Pfam Pumilio-family RNA binding repeat 386 408 IPR001313 GO:0003723
Viun8g01474 618 Pfam Pumilio-family RNA binding repeat 418 448 IPR001313 GO:0003723
Viun8g01474 618 Pfam Pumilio-family RNA binding repeat 493 508 IPR001313 GO:0003723
Viun8g01474 618 Pfam Pumilio-family RNA binding repeat 342 374 IPR001313 GO:0003723
Viun8g01474 618 Pfam Pumilio-family RNA binding repeat 569 580 IPR001313 GO:0003723
Viun8g01474 618 Pfam Pumilio-family RNA binding repeat 525 557 IPR001313 GO:0003723
Viun8g01474 618 Pfam Pumilio-family RNA binding repeat 306 336 IPR001313 GO:0003723
Viun8g01474 618 Pfam Pumilio-family RNA binding repeat 454 487 IPR001313 GO:0003723
Viun8g01474 618 FunFam Pumilio homolog 9 294 618 - -
Viun8g01474 618 SMART pum_5 376 411 IPR001313 GO:0003723
Viun8g01474 618 SMART pum_5 521 555 IPR001313 GO:0003723
Viun8g01474 618 SMART pum_5 337 372 IPR001313 GO:0003723
Viun8g01474 618 SMART pum_5 301 336 IPR001313 GO:0003723
Viun8g01474 618 SMART pum_5 449 484 IPR001313 GO:0003723
Viun8g01474 618 SMART pum_5 485 520 IPR001313 GO:0003723
Viun8g01474 618 SMART pum_5 413 448 IPR001313 GO:0003723
Viun8g01474 618 SMART pum_5 558 593 IPR001313 GO:0003723
Viun8g01474 618 ProSiteProfiles Pumilio RNA-binding repeat profile. 485 520 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01474 Viun-Chr8 24175052 24178808 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01474 - - pvu:PHAVU_008G173000g 1064.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g01474 8 24175052 24178808 Viun8g01474 8 24175052 24178808 ECH
Viun8g01474 8 24175052 24178808 Viun9g02565 9 34762702 34765455 PCT