Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02561 ATGGAAGGGAAAGCCAAGGACAAGGTGGATTTTGATTTGGGTTGCGGTTTGGTGGGGAGAATTTTCCACCTCAAAACCAGTAACAGGACAAGAAAATCCTCTGTTCATTCACTGCCCTTGAAGCCTTGCAACGCTGCACAACAGAGAGACCAGGCCAAAAACGAGTTCAAACCCCCTCTAAACCATGAACCCAAGGTTCCACGAGATACCGCCAATGGAATCAATCCTACACTGAAAGGGGAGCAGAATCCTGCCAGAAAGAGTACCTCTAGTCACCGTGCACCTTCTGCATACCGAAACATTCCAAATGGGAGACCCTCAGACGCTGCAAGAACCTCAATTCAACAAAACCATGACCCAAATGAGGAAAGTAAGAACTCTGGTAATTCTCTGGAACTTGCAAGGATAAGCACAGGTGGTAGTCATCATCAGAACAACGAGACCAAATCCCCAGCCAAAGATTTTGTGTTACCGATCACTGGGAATTTGCTTGTGAATAACAGCCCCAGAACTAGTGTTACCAAGAGCAAGGAGTTGAACTCCATGTCCGGTTCCTCTCCTTACAGTAGTAACGGCAACAAAGGCGTGATGGGGAATATCATGAGGAAGAACAGCGATGAACTTCTGCAGTTTCGGAGTCCAAGGAACAACAGAGCGGACCCTGAGGTGATGAAGTCCATGGGGAATGAAGCTTACAAGCTAGGAAGATTTGAAGAGGCTTTGATTCTGTATGACAGAGCCATTGCTCTTGACTCCAATAAGGCAACGTATCACTGCAATAAGAGCGCAGCTTTGATCGGTTTGGGAAGGTTTCTGCAGGCAATTGTTGAGTGCCAGGAAGCTATCAGACTGGAGCCTTCTTATAGCAGAGCCCACAACCGTTTGGCAACAATTTATTTCAGACTGGGAGAAGCAGAAAAGGCACTGAACTGCAATGAAACAAGTCCATGTGTTGATTCCGTTCTCAGTTTACAAGCTCAGACTCTCCAAAATCACCTTAGCAAATGCACTGAAGCTCGGAAAGTCAAAGAATGGAAAGCTATACTGAAGGAAACACAGGCTGCAGTATCTTTAGGTGCTGATTCAGCTCCACAGGTCTATTGTTTACAAACCGAAGCGTTGCTGAAGCTCCAAAGACATCAAGAGGCATACGCTACCTTCGAGAAAATGCCAAAATTTGACCTTGATAGTTGTAAGAAAATATTCGGCCCAGCTCGTACTGCTTACCTCATGATGATAGCTGCGCAAATTTACTTGGCAGCCGGCAGGTTTGAGGATGCTGTAACAACATCTGAGAAAGCAGGTAAACTAGATCCGAGTAGCTTTGAGGTGAATGCAGTGGTGAGGAGAGCCAGAGCAGTGACATCAGCCAGAATGAGTGGTAACTTACTCTTCAAGGCATCAAAATTCACGGAAGCATGCGGTGTGTACAATGAAGGACTAGAGCACGATCCATACAACTCAGTTCTGCTATGCAACAGGGCAGCATGTCGTTCGAAGCTAGGTCAATTTGAGAAAGCAATTGAAGATTGTAACGTGGCACTTGTTCTTCAGCCTAGTTATAGCAAGGCAAGGTTGAGGAGAGCAGATTGCAATGCCAAGTTGGAGCGATGGGAAGCTGCGATTCAAGACTATGAAATGCTATTAAGAGAAAAGCCAGGGGATGAGGAGGTGGCCAGAGCTCTGTTTGAGACTCAGCTTCAACTCAAGATGCTGCGTGGGGAAGATATTAAGGACTTGAAATTTGGCTCAAATTTGTTTTTCATCTCAAGCAATGATCGGTTTAGACACTACGTAACATCACCCGGGATGTCTGTGGTGCTGTTCTGCAACAAGACAACCCACAAACAAGTGTTGTTGGTGTTGGAGCAAACCTGCAAGAGATTCCCATCAGTTAATTTTCTTAAGGTGGAGATTGAAGACCACCCGTACTTGGCAAAATCAGAAGGTGTGAACTGCATCCCGGCCTTTAAAATATACAAGAATGGATCAAGGGTGAAAGAAATTCCAGGCAACAACCACGAGTTGTTAGAAAAATTAGTTAAATTATACAGCAGTTGA 2061 0.4532 MEGKAKDKVDFDLGCGLVGRIFHLKTSNRTRKSSVHSLPLKPCNAAQQRDQAKNEFKPPLNHEPKVPRDTANGINPTLKGEQNPARKSTSSHRAPSAYRNIPNGRPSDAARTSIQQNHDPNEESKNSGNSLELARISTGGSHHQNNETKSPAKDFVLPITGNLLVNNSPRTSVTKSKELNSMSGSSPYSSNGNKGVMGNIMRKNSDELLQFRSPRNNRADPEVMKSMGNEAYKLGRFEEALILYDRAIALDSNKATYHCNKSAALIGLGRFLQAIVECQEAIRLEPSYSRAHNRLATIYFRLGEAEKALNCNETSPCVDSVLSLQAQTLQNHLSKCTEARKVKEWKAILKETQAAVSLGADSAPQVYCLQTEALLKLQRHQEAYATFEKMPKFDLDSCKKIFGPARTAYLMMIAAQIYLAAGRFEDAVTTSEKAGKLDPSSFEVNAVVRRARAVTSARMSGNLLFKASKFTEACGVYNEGLEHDPYNSVLLCNRAACRSKLGQFEKAIEDCNVALVLQPSYSKARLRRADCNAKLERWEAAIQDYEMLLREKPGDEEVARALFETQLQLKMLRGEDIKDLKFGSNLFFISSNDRFRHYVTSPGMSVVLFCNKTTHKQVLLVLEQTCKRFPSVNFLKVEIEDHPYLAKSEGVNCIPAFKIYKNGSRVKEIPGNNHELLEKLVKLYSS 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02561 686 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 15 682 IPR044534 -
Viun9g02561 686 Pfam Tetratricopeptide repeat 477 509 - -
Viun9g02561 686 SUPERFAMILY Thioredoxin-like 573 682 IPR036249 -
Viun9g02561 686 MobiDBLite consensus disorder prediction 167 194 - -
Viun9g02561 686 Coils Coil 528 548 - -
Viun9g02561 686 ProSiteProfiles TPR repeat profile. 221 254 IPR019734 GO:0005515
Viun9g02561 686 SMART tpr_5 408 441 IPR019734 GO:0005515
Viun9g02561 686 SMART tpr_5 289 328 IPR019734 GO:0005515
Viun9g02561 686 SMART tpr_5 488 521 IPR019734 GO:0005515
Viun9g02561 686 SMART tpr_5 522 555 IPR019734 GO:0005515
Viun9g02561 686 SMART tpr_5 255 288 IPR019734 GO:0005515
Viun9g02561 686 SMART tpr_5 221 254 IPR019734 GO:0005515
Viun9g02561 686 SMART tpr_5 454 487 IPR019734 GO:0005515
Viun9g02561 686 Pfam Thioredoxin 616 679 IPR013766 -
Viun9g02561 686 SUPERFAMILY TPR-like 459 570 IPR011990 GO:0005515
Viun9g02561 686 ProSiteProfiles TPR repeat profile. 408 441 IPR019734 GO:0005515
Viun9g02561 686 MobiDBLite consensus disorder prediction 28 129 - -
Viun9g02561 686 Gene3D Glutaredoxin 582 685 - -
Viun9g02561 686 MobiDBLite consensus disorder prediction 75 97 - -
Viun9g02561 686 SUPERFAMILY TPR-like 220 443 IPR011990 GO:0005515
Viun9g02561 686 MobiDBLite consensus disorder prediction 106 129 - -
Viun9g02561 686 CDD TRX_family 595 680 - -
Viun9g02561 686 Pfam TPR repeat 228 263 - -
Viun9g02561 686 Gene3D Tetratricopeptide repeat domain 219 573 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02561 Viun-Chr9 34700578 34704291 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02561 K09527 - gmx:100814381 1149.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g02561 9 34700578 34704291 Viun9g02561 9 34700578 34704291 ECH
Viun8g01467 8 24034751 24038111 Viun9g02561 9 34700578 34704291 PCT