Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02324 ATGCTGCAAATCACAGGTAACTGCAATTACACCATACAAGAGTTGGAATCGTTGGTCGAAACGAAGAGCCTTGGTTTGAGCGAGTTCTTGTTCTTTTACAACTCCATTTCGGAGCAGCAGAACGGAGAAATTAGAGGCGGTGGTGGTGAGGCAGAGGAATTGGAGAGCGACCTGGTGAAAACCTTCAAGGTGTTTGACTTGGATGGAGATGGCTTCATCACCAGCCACGAGCTTGAGTCTGTGTTGAAACGGCTTGGCATGTGGGATGAGACCAATTGCAATGATTCTACGACCATGATTCGCTTCTATGACACCAACTTCGATGGTCGTCTTGATTTTCAGGAATTCAAGAACATGATGTTGGTTTCCAGAGCCTGA 378 0.4656 MLQITGNCNYTIQELESLVETKSLGLSEFLFFYNSISEQQNGEIRGGGGEAEELESDLVKTFKVFDLDGDGFITSHELESVLKRLGMWDETNCNDSTTMIRFYDTNFDGRLDFQEFKNMMLVSRA 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02324 125 Gene3D - 7 123 - -
Viun9g02324 125 ProSiteProfiles EF-hand calcium-binding domain profile. 53 88 IPR002048 GO:0005509
Viun9g02324 125 Pfam EF-hand domain pair 57 120 IPR002048 GO:0005509
Viun9g02324 125 SMART efh_1 95 123 IPR002048 GO:0005509
Viun9g02324 125 SMART efh_1 57 85 IPR002048 GO:0005509
Viun9g02324 125 SUPERFAMILY EF-hand 9 121 IPR011992 -
Viun9g02324 125 ProSiteProfiles EF-hand calcium-binding domain profile. 91 125 IPR002048 GO:0005509
Viun9g02324 125 CDD EFh 57 120 IPR002048 GO:0005509
Viun9g02324 125 ProSitePatterns EF-hand calcium-binding domain. 66 78 IPR018247 -
Viun9g02324 125 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 43 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02324 Viun-Chr9 32800868 32801815 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02324 1 121 EF-hand Containing Proteins AT1G21550 40.476 1.58e-23 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02324 K13448 - gmx:100527117 171.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g02324 9 32800868 32801815 Viun9g02324 9 32800868 32801815 ECH
Viun8g01019 8 11700715 11701508 Viun9g02324 9 32800868 32801815 PCT