Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01019 ATGTGTGCCCTAACACGCAGCGATTTGCAGAGGATTTTTGAGAAAGTGGACGTGAATGGAGACGGGTTTTTGAGCCTGGAGGAGCTGAAAATGGTGCTGGAGAAGACGGGTTTCAAGTACAGTGTGGAGGAGTTGGAGTGTCTGGTGGGAAAGAAGAGGCTTGAGTTGAGTGAGTTCTTGGTGTTTTATGAATGTATGGTGAAGCAGAAGAATGGGGAAGAAGAAGGGGGTGATGAGATTGAGGATGTGGAGAGAGACCTTGTGAAGACTTTCAAGGTGTTTGATTTGGATGGAGATGGGTTCATCACAAGCCAAGAACTTGAGTGTGTGTTGAAGAGGCTTGGCATGTGGGATGAAAGGTGTGGGAAGGATAGCACATCCATGATTTGCTCCTATGACACTAATTTTGATGGCAAACTTGATTTTCAGGAATTCAAGGACATGATGCTTCTAACAAATTCTTGA 465 0.4495 MCALTRSDLQRIFEKVDVNGDGFLSLEELKMVLEKTGFKYSVEELECLVGKKRLELSEFLVFYECMVKQKNGEEEGGDEIEDVERDLVKTFKVFDLDGDGFITSQELECVLKRLGMWDERCGKDSTSMICSYDTNFDGKLDFQEFKDMMLLTNS 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01019 154 CDD EFh 86 149 IPR002048 GO:0005509
Viun8g01019 154 FunFam Probable calcium-binding protein CML44 64 152 - -
Viun8g01019 154 ProSiteProfiles EF-hand calcium-binding domain profile. 82 117 IPR002048 GO:0005509
Viun8g01019 154 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 71 149 - -
Viun8g01019 154 Pfam EF hand 8 35 IPR002048 GO:0005509
Viun8g01019 154 SUPERFAMILY EF-hand 7 150 IPR011992 -
Viun8g01019 154 ProSiteProfiles EF-hand calcium-binding domain profile. 120 154 IPR002048 GO:0005509
Viun8g01019 154 SMART efh_1 8 36 IPR002048 GO:0005509
Viun8g01019 154 SMART efh_1 86 114 IPR002048 GO:0005509
Viun8g01019 154 SMART efh_1 124 152 IPR002048 GO:0005509
Viun8g01019 154 Gene3D - 4 45 - -
Viun8g01019 154 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Viun8g01019 154 Pfam EF hand 132 149 IPR002048 GO:0005509
Viun8g01019 154 Pfam EF hand 87 108 IPR002048 GO:0005509
Viun8g01019 154 Gene3D - 48 153 - -
Viun8g01019 154 ProSitePatterns EF-hand calcium-binding domain. 95 107 IPR018247 -
Viun8g01019 154 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01019 Viun-Chr8 11700715 11701508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01019 4 150 EF-hand Containing Proteins AT1G21550 41.892 1.19e-34 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01019 K13448 - gmx:100500561 241.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g01019 8 11700715 11701508 Viun8g01019 8 11700715 11701508 ECH
Viun8g01019 8 11700715 11701508 Viun9g02324 9 32800868 32801815 PCT