Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Viun9g02292 | ATGCGTTGCTTGCCTCTTTCTCTCGTTTTTTCCTTTCTTCTCTTTATAGAGCTTCTCCTCCCATTCTCTATTCAGAGAAGCACACCAAAGCTTCTCTGCTCTTATAGGAACAAAAAAAAAAAAAAAGGCGACAAAAGGGGCAAAGCTGTGAAAGTTGAAGCTTTTTGTTGTGCTGCAACTGAAATGGTTGGCAAGGATAATCTGAGGGCTGAGGACTTGAACTTGTGCTTTGAGAGACTTATGATGGTGGCTGGGAGTGGGAACAGTGAGAAAGGGGTGAACTTGAAGGTTGGGGTGATTACCGAGTGGAAGGATATTCCTGTTGAACTTTTGATGCAAATTTTGTCCCTTGTGGATGATCAGACAGTGATCACCGCTTCTGGAGTTTGTCGTGGTTGGAGAGATGCTATCTACTTTGGCCTTGCTCGTTTATCACTATCATGGTGTAGCAAGAACATGAATAGCTTGGTCCTATCCCTCGTTCCTAAATTTACAAAACTGCAAACTCTAATCCTTCGTCAAGACAAGCCTCAACTAGAGGATAAAGCTGTTGAGACTATTGCAGAGTGCTGTCATGAATTGCAGATTCTGGACCTCAGCAAAAGCTTCAAGCTAACTGATCGTTCACTTTATGCTATAGCATTAGGTTGTCGCGAACTCACAAAACTCAACATCAGTGGGTGTTCAGCATTTAGTGACAGTGCTCTGGCTTACCTTGCCAGTTTCTGCAGAAAACTGAAAGTTCTAAATCTCTGTGGATGTGTTAGAGCTGCATCTGATACTGCATTGCAGGCTATTGGACAGTACTGCAATCAGTTACAATCTTTGAACCTTGGATGGTGCGATAACGTTGGTGATGTTGGAGTGACCACTTTAGCATATGGGTGCCCTGATCTTAGGATAGTTGACTTGTGTGGCTGTGTCCGTATAACAGATGATAGTGTGATTGCTTTGGCTAACAGATGCCCCCATCTGAGGTCTCTTGGACTGTACTACTGCAAGAACATAACAGACAGAGCAATGTATTCTTTGGCACACAGCAAGGTGAATAACAGGATATCAGTGAAAGGAGGAAATGATGAAGATGGGTTAAGGACTTTGAACATCAGCCAATGCACTGCACTCACTCCATCTGCGGTTCAAGCGGTTTGTGACTCATTCCCATCTCTCCACACATGCTCAGGGAGGCACTCACTCATCATGAGTGGCTGCCTCAACTTGACCTCTGTGCATTGTGCCTGTGCTGTCCATGCACACCGTGCATTCACCCATTTCCCTCACCCAGCTCATTAA | 1293 | 0.4462 | MRCLPLSLVFSFLLFIELLLPFSIQRSTPKLLCSYRNKKKKKGDKRGKAVKVEAFCCAATEMVGKDNLRAEDLNLCFERLMMVAGSGNSEKGVNLKVGVITEWKDIPVELLMQILSLVDDQTVITASGVCRGWRDAIYFGLARLSLSWCSKNMNSLVLSLVPKFTKLQTLILRQDKPQLEDKAVETIAECCHELQILDLSKSFKLTDRSLYAIALGCRELTKLNISGCSAFSDSALAYLASFCRKLKVLNLCGCVRAASDTALQAIGQYCNQLQSLNLGWCDNVGDVGVTTLAYGCPDLRIVDLCGCVRITDDSVIALANRCPHLRSLGLYYCKNITDRAMYSLAHSKVNNRISVKGGNDEDGLRTLNISQCTALTPSAVQAVCDSFPSLHTCSGRHSLIMSGCLNLTSVHCACAVHAHRAFTHFPHPAH | 430 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Viun9g02292 | 430 | SUPERFAMILY | F-box domain | 103 | 139 | IPR036047 | GO:0005515 | |
| Viun9g02292 | 430 | Gene3D | - | 100 | 139 | - | - | |
| Viun9g02292 | 430 | SMART | LRR_CC_2 | 322 | 347 | IPR006553 | - | |
| Viun9g02292 | 430 | SMART | LRR_CC_2 | 361 | 386 | IPR006553 | - | |
| Viun9g02292 | 430 | SMART | LRR_CC_2 | 296 | 321 | IPR006553 | - | |
| Viun9g02292 | 430 | SMART | LRR_CC_2 | 243 | 269 | IPR006553 | - | |
| Viun9g02292 | 430 | SMART | LRR_CC_2 | 191 | 216 | IPR006553 | - | |
| Viun9g02292 | 430 | SMART | LRR_CC_2 | 270 | 295 | IPR006553 | - | |
| Viun9g02292 | 430 | SMART | LRR_CC_2 | 217 | 242 | IPR006553 | - | |
| Viun9g02292 | 430 | SMART | LRR_CC_2 | 164 | 190 | IPR006553 | - | |
| Viun9g02292 | 430 | Pfam | Leucine Rich repeat | 322 | 345 | IPR001611 | GO:0005515 | |
| Viun9g02292 | 430 | Pfam | Leucine Rich repeat | 270 | 293 | IPR001611 | GO:0005515 | |
| Viun9g02292 | 430 | Pfam | F-box-like | 104 | 137 | IPR001810 | GO:0005515 | |
| Viun9g02292 | 430 | CDD | F-box_AtSKP2-like | 102 | 149 | - | - | |
| Viun9g02292 | 430 | FunFam | F-box protein SKP2B | 138 | 358 | - | - | |
| Viun9g02292 | 430 | Gene3D | Ribonuclease Inhibitor | 140 | 424 | IPR032675 | - | |
| Viun9g02292 | 430 | PANTHER | UNCHARACTERIZED | 294 | 409 | - | - | |
| Viun9g02292 | 430 | SUPERFAMILY | RNI-like | 141 | 411 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Viun9g02292 | Viun-Chr9 | 32337292 | 32340690 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Viun9g02292 | K03875 | - | gmx:100818928 | 709.523 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Viun9g02292 | 9 | 32337292 | 32340690 | Viun9g02292 | 9 | 32337292 | 32340690 | ECH | |
| Viun8g00986 | 8 | 11049402 | 11053745 | Viun9g02292 | 9 | 32337292 | 32340690 | PCT |