Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01657 ATGGCTGAAGAAGCTTCAAAGACAAGCACAGCTCAAGAGGAAGCGGTGGTCGCTGACGTGGCACCTGCTGAGCGATCAGACACCAACGTTGTTGTGTCTGTAGAAGAAGAAGAAAAAGCATCCCCGGAGAAGGAGAACATTCCAGAAACCGAGACGGAGGTTTCCAAAGATAACATTCCGGAATCAGGTTCGTTCAAGGAAGAAAGCACAATTGTCTCGGACCTGCCAGAAACAGAGAAGAAGGCACTGCAAGAACTCAAACAACTCATTCAGGAAGCACTCCAAAAGCACGAGTTTTCTCCCAAAGATGAAAAACCCGAAGATGCCACCGACAACAAGGAGGAAGAGAAGCCCGTGGAGGAAGAGAAGGAACACGTGGTTCATGCTGCTGCTGCTGCTGCTGGTACTGACGTGGCAGAAGCGACAGAAAAAGAAGCTGCGGAAGTGAAGGAGACTGAAGCTGAAACTAAAACTGAAACGGAGGTTGGTACAGAGAAAGCGGCTGTTAGCGATGGTGGTTCTGTTGCGGAGGATGGAGCGAAAACGGTGGAGGCTATCGAGGAGAGCGTTGTGCCGGTGAGTGTGTCTGAGGAGGAAGCGAAGGTGGAAGGTGGTTCGGCTTCCCCCGAAGAGGTTTCGATTTGGGGAGTGCCGCTTCTTGCTGATGAGAGGAGCGATGTGATTCTGCTGAAGTTTCTGCGTGCGAGGGATTTCAAGGTGAAGGAAGCGTTTGCGATGATAAAGGGGACGATTCGGTGGAGGAAGGAGTTCGGGATGGAGGAGCTGTTGGAGGAGGATTTGGGGGATGATTTGGAGAAGGCGGTGTACATGCATGGGTTTGACAAGGAGGGTCACCCTGTGTGTTATAACATCTATGGGGAGTTTCAGAACAAGGAGTTGTACAAGAAGAGTTTCTCTGATGAGGAGAAGAGGCACAGGTTCCTTAGGTGGAGGATTCAGTTCCTGGAGAAGAGTATCAGGAAGCTTGATTTTACCCCTGGTGGGATAAGCACCATTGTTCAAGTCAATGATCTCAAGAACTCTCCTGGACCTGCCAAGTGGGAGCTTAGACAGGCTACCAAACAGGCCCTGCAGTTGCTTCAGGATAACTATCCTGAGTTTGTAGCCAAACAGGTGTTTATCAATGTGCCATGGTGGTACTTGGCAGTGAACAGGATGATAAGTCCTTTTCTTACTCAGAGAACCAAAAGCAAGTTTGTCTTTGCTGGCCCTTCCAAATCAGCCGAGACACTTTTGAGATATATTGCTGCTGAGCAACTTCCGGTGAAGTATGGCGGACTAAGTAAAGATGGGGAATTCGGAATTTCCGATGCTGTCACAGAAATTACAGTGAGACCAGCAGCAAAACATACCGTGGAGTTTCCTGTTACTGAGAACTCCCTACTGTCTTGGGAACTCAGAGTAATAGGGTGGGACGTAAGCTATGGTGCAGAGTTTGTGCCAAGTTCAGAGGGAAGCTATACTGTGATCATTCAGAAGGCTAGAAAGGTTGGTTCATCAGAAGAACCGGTGCTTTGCAGCAATTACAAAATTGGTGAACCTGGGAAAGTGGTTCTCACCATTGACAACCAAAGCTCTAAGAAGAAGAAACTCTTGTACCGCTTGAAGGTCAAGCCCTCTTCTTCTGACTGA 1653 0.487 MAEEASKTSTAQEEAVVADVAPAERSDTNVVVSVEEEEKASPEKENIPETETEVSKDNIPESGSFKEESTIVSDLPETEKKALQELKQLIQEALQKHEFSPKDEKPEDATDNKEEEKPVEEEKEHVVHAAAAAAGTDVAEATEKEAAEVKETEAETKTETEVGTEKAAVSDGGSVAEDGAKTVEAIEESVVPVSVSEEEAKVEGGSASPEEVSIWGVPLLADERSDVILLKFLRARDFKVKEAFAMIKGTIRWRKEFGMEELLEEDLGDDLEKAVYMHGFDKEGHPVCYNIYGEFQNKELYKKSFSDEEKRHRFLRWRIQFLEKSIRKLDFTPGGISTIVQVNDLKNSPGPAKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKSAETLLRYIAAEQLPVKYGGLSKDGEFGISDAVTEITVRPAAKHTVEFPVTENSLLSWELRVIGWDVSYGAEFVPSSEGSYTVIIQKARKVGSSEEPVLCSNYKIGEPGKVVLTIDNQSSKKKKLLYRLKVKPSSSD 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01657 550 ProSiteProfiles GOLD domain profile. 443 544 IPR009038 -
Viun9g01657 550 Pfam CRAL/TRIO domain 273 433 IPR001251 -
Viun9g01657 550 MobiDBLite consensus disorder prediction 141 164 - -
Viun9g01657 550 MobiDBLite consensus disorder prediction 96 128 - -
Viun9g01657 550 PANTHER PATELLIN-1 35 547 IPR044834 GO:0008289
Viun9g01657 550 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 264 439 IPR001251 -
Viun9g01657 550 CDD SEC14 270 434 IPR001251 -
Viun9g01657 550 Gene3D GOLD domain 449 545 - -
Viun9g01657 550 PRINTS Cellular retinaldehyde-binding protein signature 228 250 - -
Viun9g01657 550 PRINTS Cellular retinaldehyde-binding protein signature 391 410 - -
Viun9g01657 550 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 444 546 IPR036598 -
Viun9g01657 550 SMART CRAL_TRIO_N_2 225 250 IPR011074 -
Viun9g01657 550 Pfam CRAL/TRIO, N-terminal domain 208 248 IPR011074 -
Viun9g01657 550 Coils Coil 139 159 - -
Viun9g01657 550 SUPERFAMILY CRAL/TRIO N-terminal domain 71 266 IPR036273 -
Viun9g01657 550 Gene3D - 212 448 IPR036865 -
Viun9g01657 550 MobiDBLite consensus disorder prediction 30 63 - -
Viun9g01657 550 MobiDBLite consensus disorder prediction 1 77 - -
Viun9g01657 550 MobiDBLite consensus disorder prediction 92 177 - -
Viun9g01657 550 SMART sec14_4 269 436 IPR001251 -
Viun9g01657 550 SUPERFAMILY CRAL/TRIO domain 275 436 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01657 Viun-Chr9 25012520 25015935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01657 229 428 Acyl Lipid Metabolism Gene Families AT1G55840 28.241 4.76e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01657 - - gmx:100805585 794.653
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g01657 9 25012520 25015935 Viun9g01657 9 25012520 25015935 ECH
Viun3g00753 3 4648842 4652288 Viun9g01657 9 25012520 25015935 PCT