Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00753 ATGGCTGAAGAGGCTTCAAACCAAGCACCACCTTCTCAAGAATCTGTGGTGCAAGTGGAGGAAGTGGTGGTAACTGATGTTCTTCAGCCTGCAGACAAAACACCACCACCGCCGCCAACTACAACGACCACTGTTCCTGTCGAGAGAGATTCGCCGCCACAACCTGAGCCTGAGGCGCCGGAGAAGAAGCCTGTTGAGGAAACCGTTACTCTCGAGACTCACCTCTCCAAACCCAACAACGCCGATGACAGCAGCAATGATGAGAAAGTCTCTGAATTCAAGGAAGAAAGCACCAAACTTTCCGACCTGTCGGAAAACCAGAACAAGGCACTCCAAGACCTCAAGAAGCTCGTTCAAGAAGCACTCCAAAGTCACGAGTTTTCCTCCAAAGAAGAAAAGAAGACACCTCCAACAACGGCTTCTGCTGCTGACAAGGAAGAACAACAACAGCCGCAGCAACAAGAAGAAGTTGTGACTGAAACTAAAACTGATGCTGCCCCAGAAAAAACCGAGGAGGAACAGGTGGAAACAAAGAAAGAGGACCAAGTCGAAACAGAGAAAGAGGAACAAGTAGAAAAAGAAGAGAAGAAGGAGGAAGTGAAAGAAACGAAGGAAGATGATGATGGAGCAAAAACTGTGGAGGCCATTGAAGAGACCGTTGTTGCTGTCTCTTCTTCTGTTCCGCCTCAAGCTGAAGAGAAAGCTTCTGAAACGGAGGCCAAAGAGGAAGCTTCGCCGCCACTTCCACCCGAAGAAGTTTCCATTTGGGGAGTGCCACTTCTTGCTGACGAGAGGAGCGATGTGATTCTTTTGAAGTTTCTGCGCGCGAGAGAGTTTAAAGTTAAGGAGGCGTTCACCATGCTGAAGAACACGATCCGGTGGAGGAAGGAGTTTGGGATGGAGGAGCTGATGGAGGAGAAGCTGGGGGATGAGTTGGAGAAGGTGGTGTTCATGCATGGCACTGACAAGGAGGGACACCCCGTGTGTTACAACATATACGGGGAGTTCCAGAATAAGGATTTGTACAGGAAAACTTTTTCCGATGAGGAGAAGAGAGAGAAGTTCCTCAGATGGAGAATTCAGTTCCTGGAAAAGAGTATAAGGAAGTTGGATTTCAACCCTGGTGGCATTTGCACCATTGTTCAGGTCAATGACCTCAACAAATCTCCTGGACCTGCCAAGTGGGAACTAAGACAAGCCACCAAAAATGCCCTACAATTGCTTCAAGACAATTACCCTGAATTTGTAGCCAAACAGATTTTCATTAATGTACCATGGTGGTACCTGGCAGTGAATAGGATGATAAGTCCTTTTCTTACTCAAAGGAGTAAGAGTAAGTTTGTCTTTGCTGGGCCTTCGAAATCAACAGAAACCCTTTTGAGTTACATAGCTCCGGAACAGCTTCCGGTGAAATACGGTGGATTAAGCAAAGATGGGGAATTCGCAAATACCGATGCTGTCACAGAAATCACAGTGAGGGCGGCGTCAAAGCATACCGTTGAATTTCCAGTAACTGAGAAGTGTTTACTCTCTTGGGAGCTGAGAGTAATAGGGTGGGAAGTAAGCTATGGTGCAGAATTTGTACCAGATTCAGAAGGAAGCTATACAGTAATTGTGCAGAAGAGTAGAAAGGTTGGTTCATCAGAAGAACCAGTGGTTTGCAATAGTTTTAAGGTTGGTGAACCTGGAAAAGTTGTTCTCACAATTGACAACACAAGCTCCAAGAAGAAGCTGCTCTTGTACCGATTGAAGACCAAACCTTCACCCTCAGATTGA 1776 0.4662 MAEEASNQAPPSQESVVQVEEVVVTDVLQPADKTPPPPPTTTTTVPVERDSPPQPEPEAPEKKPVEETVTLETHLSKPNNADDSSNDEKVSEFKEESTKLSDLSENQNKALQDLKKLVQEALQSHEFSSKEEKKTPPTTASAADKEEQQQPQQQEEVVTETKTDAAPEKTEEEQVETKKEDQVETEKEEQVEKEEKKEEVKETKEDDDGAKTVEAIEETVVAVSSSVPPQAEEKASETEAKEEASPPLPPEEVSIWGVPLLADERSDVILLKFLRAREFKVKEAFTMLKNTIRWRKEFGMEELMEEKLGDELEKVVFMHGTDKEGHPVCYNIYGEFQNKDLYRKTFSDEEKREKFLRWRIQFLEKSIRKLDFNPGGICTIVQVNDLNKSPGPAKWELRQATKNALQLLQDNYPEFVAKQIFINVPWWYLAVNRMISPFLTQRSKSKFVFAGPSKSTETLLSYIAPEQLPVKYGGLSKDGEFANTDAVTEITVRAASKHTVEFPVTEKCLLSWELRVIGWEVSYGAEFVPDSEGSYTVIVQKSRKVGSSEEPVVCNSFKVGEPGKVVLTIDNTSSKKKLLLYRLKTKPSPSD 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00753 591 Gene3D - 299 489 IPR036865 -
Viun3g00753 591 MobiDBLite consensus disorder prediction 81 102 - -
Viun3g00753 591 Pfam CRAL/TRIO, N-terminal domain 250 290 IPR011074 -
Viun3g00753 591 SMART CRAL_TRIO_N_2 266 291 IPR011074 -
Viun3g00753 591 MobiDBLite consensus disorder prediction 141 160 - -
Viun3g00753 591 MobiDBLite consensus disorder prediction 54 70 - -
Viun3g00753 591 MobiDBLite consensus disorder prediction 161 214 - -
Viun3g00753 591 MobiDBLite consensus disorder prediction 1 19 - -
Viun3g00753 591 Coils Coil 179 206 - -
Viun3g00753 591 MobiDBLite consensus disorder prediction 1 250 - -
Viun3g00753 591 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 305 480 IPR001251 -
Viun3g00753 591 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 485 584 IPR036598 -
Viun3g00753 591 Gene3D - 232 297 - -
Viun3g00753 591 CDD SEC14 311 475 IPR001251 -
Viun3g00753 591 Pfam CRAL/TRIO domain 314 474 IPR001251 -
Viun3g00753 591 Gene3D GOLD domain 490 585 - -
Viun3g00753 591 PANTHER PATELLIN-1 165 588 IPR044834 GO:0008289
Viun3g00753 591 SUPERFAMILY CRAL/TRIO domain 315 477 IPR036865 -
Viun3g00753 591 PRINTS Cellular retinaldehyde-binding protein signature 269 291 - -
Viun3g00753 591 PRINTS Cellular retinaldehyde-binding protein signature 432 451 - -
Viun3g00753 591 MobiDBLite consensus disorder prediction 125 140 - -
Viun3g00753 591 Coils Coil 100 124 - -
Viun3g00753 591 ProSiteProfiles GOLD domain profile. 484 585 IPR009038 -
Viun3g00753 591 SMART sec14_4 310 477 IPR001251 -
Viun3g00753 591 SUPERFAMILY CRAL/TRIO N-terminal domain 100 306 IPR036273 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00753 Viun-Chr3 4648842 4652288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00753 270 469 Acyl Lipid Metabolism Gene Families AT1G55840 27.014 1.39e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00753 - - gmx:100788197 820.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00753 3 4648842 4652288 Viun3g00753 3 4648842 4652288 ECH
Viun3g00753 3 4648842 4652288 Viun9g01657 9 25012520 25015935 PCT