Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01590 ATGGAACCAAACGACGAGAACGCAGGCAGCACCAGCAGAGAGGAGCAAGAAGAGGCATTGGTGGCTTTGATCGAACACCGAACCCGCGAAGTCAAAAACCTCCGTCTCCGTTTCGCTTATTACAAAACCCAGCTTCACGATGCGGAGCAAAAGTTGCAAGATACTGAATCCAAATTGGCTCGTCTTCGAGGTCACACTAAAGCAGTGTCATCCCGAAATACCGTCGATGATGAAATTAAAACTGTGAAGACAGAGCGCAGATCAAATAGTCCCATTGATAGAAATGAAGGCTCTATCAGAAACCGACATCAATCTAAACCAGAACTTCTTATTCCTTCAGTGAATCCAAAAATTTCACAACCTGTATTGTTGCCTAAGCCTTCTTCAAAAGCTTCAGTAAGTTCCAATTCTGAGGCCACTCCTGGAATCCATAATTCTCCAATCACAGGTGATAGCTCTAGGGGAAAATCTGACAAGTCCCATAGTCATAGACTTTCTTCTGAGCAGCAAAAAACTGAAATCAAGGACAAAGGAACAAAAAGGAAATTTGAACAAAAAGAACACAAGGAATTGATTCCTTTAATATGCAAGAGTTCTTCACCAAGCTTAGTACGCTCTCAAACAAGCAACCACATCTCAAGTCAACACAAGAGGAAATTGCGGAGTATTGCTTTGTGCCCTGTGAATGATCAGCTTTTTGTGACCAGTGCTCTGGATGGAATGGTCAACTTCTGGCAAATTCAGGCTAAGGGAGCAGGAGCCTCTCGTCTTAGCACCACTGATTGTGCATCCCAAAAGCAGAGGAGGTGGCCAGAAGATTTAGTTTGGCACCCAGAAGGAAACAGCCTATTTGCAGTATACAGTGCTGATGGTGGCGACTCTCAAGTATCGATTACAAATCTGAATAAAGGACAACAAGGGGGAGAACGCGTAAAGTTCTTAGAGGACAAGCCTCATGTTAAGGGAATTATCAATGGCATTGTTTTTATGCCATGGGAAAATATATGTTTTGTAACTGGTGGAAGTGATCATGCTGTTGTACTTTGGAGTGAGCAGGAGGGTGAAAAGTGGAAACCAAAGGCATTGCACAGGAATCTTCACTCATCTGCTGTAATGGGAGTTGCCGGTATGCAGCACAAGCAGATGGTGTTATCTGTTGGTGCAGATAGGAGGATATTTGGGTATGATGTTCATGTAGGAAGAGCGGATTTCAAGCATCAGGTTGATAGCAAATGCATGAGTGTGCTGCCCAATCCGTGCGACTACAATTTATTCATGGTTCAAACAGGGACCCATGAGAGACAACTTCGGTTGTTTGATATTAGATTGAGGAATACAGAACTTCATGCTTTTGGATGGAAGCAAGAAAGCAGTGATTCTCAATCAGCTCTGATAAATCAGTCTTGGTCTCCTGATGGACTATATATAACATCTGGTTCTGCAGATCCTGTGATTCACATATTCGATATAAGGTATACTGCCCACAAGCCTTCCCAATCTATAAGAGCACATCAGAAACGAGTCTTCAGAGCCATGTGGCTTCAGTCCATTCCTCTTGTCATTTCCATATCATCCGATCTTAACATTGGACTGCACAAAGTTTACGCATGA 1611 0.4314 MEPNDENAGSTSREEQEEALVALIEHRTREVKNLRLRFAYYKTQLHDAEQKLQDTESKLARLRGHTKAVSSRNTVDDEIKTVKTERRSNSPIDRNEGSIRNRHQSKPELLIPSVNPKISQPVLLPKPSSKASVSSNSEATPGIHNSPITGDSSRGKSDKSHSHRLSSEQQKTEIKDKGTKRKFEQKEHKELIPLICKSSSPSLVRSQTSNHISSQHKRKLRSIALCPVNDQLFVTSALDGMVNFWQIQAKGAGASRLSTTDCASQKQRRWPEDLVWHPEGNSLFAVYSADGGDSQVSITNLNKGQQGGERVKFLEDKPHVKGIINGIVFMPWENICFVTGGSDHAVVLWSEQEGEKWKPKALHRNLHSSAVMGVAGMQHKQMVLSVGADRRIFGYDVHVGRADFKHQVDSKCMSVLPNPCDYNLFMVQTGTHERQLRLFDIRLRNTELHAFGWKQESSDSQSALINQSWSPDGLYITSGSADPVIHIFDIRYTAHKPSQSIRAHQKRVFRAMWLQSIPLVISISSDLNIGLHKVYA 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01590 536 Gene3D - 199 363 IPR015943 GO:0005515
Viun9g01590 536 SUPERFAMILY WD40 repeat-like 218 531 IPR036322 GO:0005515
Viun9g01590 536 MobiDBLite consensus disorder prediction 125 153 - -
Viun9g01590 536 MobiDBLite consensus disorder prediction 70 103 - -
Viun9g01590 536 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 6 534 - -
Viun9g01590 536 SMART WD40_4 307 350 IPR001680 GO:0005515
Viun9g01590 536 SMART WD40_4 356 396 IPR001680 GO:0005515
Viun9g01590 536 SMART WD40_4 206 246 IPR001680 GO:0005515
Viun9g01590 536 SMART WD40_4 494 533 IPR001680 GO:0005515
Viun9g01590 536 SMART WD40_4 452 489 IPR001680 GO:0005515
Viun9g01590 536 MobiDBLite consensus disorder prediction 154 186 - -
Viun9g01590 536 Coils Coil 45 65 - -
Viun9g01590 536 Gene3D - 364 535 IPR015943 GO:0005515
Viun9g01590 536 MobiDBLite consensus disorder prediction 63 186 - -
Viun9g01590 536 Pfam WD domain, G-beta repeat 466 489 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01590 Viun-Chr9 23522465 23528237 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01590 - - gmx:100799587 966.837
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g01590 9 23522465 23528237 Viun9g01590 9 23522465 23528237 ECH
Viun3g00698 3 4324356 4327025 Viun9g01590 9 23522465 23528237 PCT