Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00698 ATGGGACTCCATCCCAACCCAACGGAACACCACCAAAACGGCGTCGCCAGTAGCAGGCAAGAACACGAAGAAACATTGCTGGCTCTCATCGAACACCGTACCCGTGACGTCAAACATATCTCTTATTGTATCTCTTATTACACCTCCCAGCTTGAGGAAGCAGAGAAGAGTTTGTTGGAATCTAAATCAAAATTGGCTCGTTTACGAGGTCTAACTGGTGCAAGTTCATCACTTGTTGACACTGAACATGTGAAGATAGAACGTGAATCAAAAATCGGTTCTTTTCATAAAAGTGACGGTTCTTCCAAAAACCACCTTCGGTCTAAGTTACGCCTTGTTCGTGTGGGTTCAAAATTTTCGCATTCAGTACCGTTGGCACCTTCTTCTTTTGCTAGGTCAACGGTAAAGTCTGATAACACTCAGAGAATCCCTGCTGAACAGGAAAGCATTGAAGTCCAAGGCAGAGGATGCAAAAGGAGGTTTTTTGAACAGAAAGAGGCTGAGGAAGTGATACCGTTGATATGTAAAAGTTCTTCACCAGAATCAGTGCTTTATCAAGCAAGCAATCACTTCTCTAGTCAACACAAGAGGAGAGTGCGATGTATTGCTGTGTGTCCTGTAAATGATCACCAATTTGTCACCAGTGCTTTGGATGGAGTGGTCAACTTGTGGGAAATTCATTCGTCACAGTCTGGAGCTTGTCTTCTCCGAAGTACAAATTGTATATCCCCACAGCAGAGATGGCCAGAAGACATAGTTTGGCACCCAGACGGAAACACCTTGCTCTCGGTATATAGTGCTGATGGTCGAGACTCTCAAATATCAGTTACGGATTTCGGTAGAGTAAAAACTGACGGGAGAGCGAACCATGTAAGTTTCTTAGAGGACAAACCTCACGTGACGGGTGTCATAAATAGCATTGCTTTTCTGCCTTGGGAGGAGAATACCAGTTTTGTAACCGGAGGAACAGACCATGCTGTCGTATTGTGGCGTGAGAATGGCCATAACAAATGGAAGCCAGAAGCATTGCACAGGAATCTTCACTCTTCAGCCGTCATGGGAGTATCTGGTATGCAGCAGAAGCAACTTGTGCTGTCTGTTGGCAAAGACAAGAGAATCTTGGGGTACGATGCTAATGTCGGAAGAAAAGATTTCATGCACCAAGTTGACAGTAAATGTTTGAGTGTTCTGCCAAATCCCTGTGACTTTAATCTATTCATGGTTCAAACCGGGACTCCTGAGAGACAGCTTCGATTATTTGACATGAGATCAAGAAGGTCAGAAGTTCATGGTTTTGGATGGAAGCAAGAAAGCAGCGAGTCTCAGTCAGCTCTGATAAACCAAGATTGGTCCCCAAATGGAGTATACATAACATCTGGTTCAGCTGATCCTATGATTCACATATTTGACATAAGATATAATGGTCACAAACCTTCCCAATCTATAGAAGCTCATCAGAAACGAGTCTTCAGAGCCATGTGGCTTCGCTCTCTTCCCTTACTCCTTTCCATATCATCTGATCTCCACATTGGCTTACACAAAATTGTGTAG 1551 0.4391 MGLHPNPTEHHQNGVASSRQEHEETLLALIEHRTRDVKHISYCISYYTSQLEEAEKSLLESKSKLARLRGLTGASSSLVDTEHVKIERESKIGSFHKSDGSSKNHLRSKLRLVRVGSKFSHSVPLAPSSFARSTVKSDNTQRIPAEQESIEVQGRGCKRRFFEQKEAEEVIPLICKSSSPESVLYQASNHFSSQHKRRVRCIAVCPVNDHQFVTSALDGVVNLWEIHSSQSGACLLRSTNCISPQQRWPEDIVWHPDGNTLLSVYSADGRDSQISVTDFGRVKTDGRANHVSFLEDKPHVTGVINSIAFLPWEENTSFVTGGTDHAVVLWRENGHNKWKPEALHRNLHSSAVMGVSGMQQKQLVLSVGKDKRILGYDANVGRKDFMHQVDSKCLSVLPNPCDFNLFMVQTGTPERQLRLFDMRSRRSEVHGFGWKQESSESQSALINQDWSPNGVYITSGSADPMIHIFDIRYNGHKPSQSIEAHQKRVFRAMWLRSLPLLLSISSDLHIGLHKIV 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00698 516 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 9 515 - -
Viun3g00698 516 Gene3D - 337 515 IPR015943 GO:0005515
Viun3g00698 516 MobiDBLite consensus disorder prediction 1 22 - -
Viun3g00698 516 Coils Coil 51 71 - -
Viun3g00698 516 Gene3D - 97 331 IPR015943 GO:0005515
Viun3g00698 516 SMART WD40_4 433 470 IPR001680 GO:0005515
Viun3g00698 516 SMART WD40_4 235 278 IPR001680 GO:0005515
Viun3g00698 516 SMART WD40_4 337 377 IPR001680 GO:0005515
Viun3g00698 516 SMART WD40_4 287 331 IPR001680 GO:0005515
Viun3g00698 516 SMART WD40_4 186 225 IPR001680 GO:0005515
Viun3g00698 516 SMART WD40_4 475 514 IPR001680 GO:0005515
Viun3g00698 516 Pfam WD domain, G-beta repeat 447 470 IPR001680 GO:0005515
Viun3g00698 516 ProSiteProfiles Trp-Asp (WD) repeats profile. 192 230 IPR001680 GO:0005515
Viun3g00698 516 SUPERFAMILY WD40 repeat-like 193 512 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00698 Viun-Chr3 4324356 4327025 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00698 - - ccaj:109813667 673.315
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00698 3 4324356 4327025 Viun9g01590 9 23522465 23528237 PCT