Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01576 ATGGCTAGGGTTTTGGCTCAGTCAATTAACGTCCCTGGTCTAGTGGCTGAGCATAGACATGGTCAGCAAAAGGGATCTGGAAGATCAAAAAGACCAGCCAAAATGATGAATGCAGTACGTACAAGTGGATTAAGAATGTCAGGTTTTACAGGACTCCGAACTTTTAATCCTTTGGATACTATGTTGAGACCTGGAATAGATTTTCATTCTAAAGTATCCATTGCGACTTCTGCACGCCGTGGAAGAGCTACCAGATGTGTACCTAAAGCCATGTTTGAGCGTTTCACTGAGAAAGCAATTAAAGTAATTATGCTAGCCCAGGAGGAAGCAAGGCGTCTTGGTCATAATTTTGTTGGAACAGAGCAAATTCTATTGGGTCTTATCGGTGAAGGCACTGGTATTGCTGCCAAGGTTCTGAAGTCAATGGGGATCAACCTTAAAGATGCTCGTGTGGAAGTAGAGAAGATAATTGGAAGAGGGAGTGGATTTGTAGCCGTTGAGATTCCGTTTACTCCTCGTGCAAAGCGTGTTTTGGAACTTTCACTGGAGGAAGCTCGTCAACTTGGTCACAATTATATTGGATCAGAGCACCTGCTACTGGGTCTTCTTCGAGAAGGTGAGGGTGTTGCAGCACGTGTTCTGGAAAACCTGGGTGCTGATCCTACCAACATTCGCACACAGGTTATTCGCATGGTGGGTGAGAGTGCCGACAGTGTTACTGCTACTGTTGGTTCGGGAAGTAGTGGGAATAAGATGCCAACTTTGGAGGAGTATGGTACGAATTTGACCAAGCTAGCAGAAGAGGGAAAATTGGATCCTGTTGTGGGAAGGCAGCAGCAAATTGAGCGTGTGACACAAATTTTAGGCCGTCGAAAAAATAATCCTTGTCTGATTGGAGAACCTGGTGTTGGGAAGACAGCAATTGCTGAAGGTCTTGCTCAGCGGATTGCAAATGGTGATGTTCCTGAAACCATAGAGGGCAAAAAGGTTATAACCCTTGACATGGGTTTGCTTGTTGCTGGAACTAAATATCGTGGTGAGTTTGAGGAGAGGTTGAAGAAACTGATGGAAGAAATCAAGCAAAGTGACGAGATAATCCTTTTTATCGATGAGGTACACACTTTGATTGGAGCAGGAGCAGCAGAAGGGGCAATTGATGCTGCTAACATACTTAAGCCAGCTCTTGCAAGGGGTGAACTCCAGTGTATTGGAGCCACAACATTAGACGAATATAGAAAGCACATTGAAAAGGATCCTGCTTTAGAGAGACGATTCCAGCCAGTTAAAGTACCAGAACCGACTGTTGATGAAACAATACAGATTCTGAAAGGACTTAGAGAACGATATGAAATTCATCACAAGCTCCGCTATACTGATGAGGCTCTTGTAGCTGCTGCACAGCTGTCATACCAGTATATCAGTGATCGGTTTTGCCGGACAAACTATAGATTGATTGATGAAGCTGGTTCCCGAGTTCGGCTTCAACATGCACAGTTACCGGAAGAAGCAAGAGAACTTGACAAAGAGGTCAGGCAGATTATAAAGGAGAAAGAGGAAGCTGTTCGTAACCAAGACTTTGAAAAGGCTGGAGAGCTACGAGATAGAGAAATGGATCAGGCACAGATCTCAACACTTGTAGAGAAAGGCAAGGAGATGAGCAAAGCAGAGACTGAGGCAGGGGATGGAGGTCCTACTGTGACTGAAGCTGACATACAGCATATTGTCTCATCCTGGACTGGTATTCCGGTTGAGAAAGTCTCCAGTGAATCTGATCGCCTCCTCAAGATGGAAGAGATACATAAGCGAGTCATTGGTCAGGATGAAGCAGTGAAAGCCATTAGTCGGGCTATTCGTCGAGCTCGTGTTGGACTGAAGAACCCTAGTCCAATTGCTAGCTTCATCTTTTCTGGTCCAACTGGTGTGGGGAAGTCTGAATTGGCCAAAGCATTGGCTGCATACTACTTTGGCTCTGAAGAAGCTATGATACGACTTGACATGAGTGAGTTTATGGAAAGACACACAGTTTCCAAACTTATTGGTTCACCTCCTGGATATGTTGGTTACACTGAAGGTGGGCAGTTGACCGAGGCAGTTCGACGTCGTCCTTACACTGTTGTACTATTTGATGAGATTGAGAAAGCCCATCCCGATGTGTTCAACATGATGCTTCAGATCCTGGAAGATGGAAGACTAACTGACAAAGGAAGAACTGTGGATTTCAAGAACACACTTCTTATAATGACATCAAATGTTGGAAGCAGTGTTATTGAGAAAGGAGGCCGTCGAATTGGATTTGATCTGGATTATGATGAGAAGGACAGCAGTTATAATAGAATCAAGAGCTTGGTGACTGAGGAGCTAAAGCAATACTTTAGGCCAGAATTTTTGAATAGGTTGGATGAAATGATTGTCTTCAGGCAACTCACAAAACTGGAGGTGAAGGAGATTGCTGACATAATGCTCAATGAGGTGTTTGCTAGACTGAAGGTGAAAGATATTGAACTTCAAGTAACAGAAAGATTTAGACAGAGTGGTGGAGGAAGTTATAATCCTAGTTACGGAGCCAGACCTTTAAGAAGAGCTATTAATGCGACTTTTGGAAGACAGCATGCAGAGAAGATGCTTGCAAGAGAGATCAAAGAGGGTGACTCTGTTATAGTGGATGTTGATTCTGATGGTAACGTGATTGTGCTCAATGGTAGCAGTGGAGCCCCCGAGTCCTTACAGAGGCACTTCCTGTATGATGACGCGGTTAAATTTCTGATACTATGTGTACTTAATATGTCCAAACCATAG 2796 0.441 MARVLAQSINVPGLVAEHRHGQQKGSGRSKRPAKMMNAVRTSGLRMSGFTGLRTFNPLDTMLRPGIDFHSKVSIATSARRGRATRCVPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPTNIRTQVIRMVGESADSVTATVGSGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQQQIERVTQILGRRTXNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDEALVAAAQLSYQYISDRFCRTKXYRLIDEAGSRVRLQHAQLPEEARELDKEVRQIIKEKEEAVRNQDFEKAGELRDREMDLXAQISTLVEKGKEMSKAETEAGDGGPTVTEADIQHIVSSWTGIPVEKVSTXESDRLLKMEETXHKRVIGQDEAVKAISRAIRRARVGLKNPNXPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSXGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLNEVFARLKVKDIELQVTERFRXQSGGGSYNPSYGARPLRRAINATFGRQHAEKMLAREIKEGDSVIVDVDSDGNVIVLNGSSGAPESLQRHFLYDDAVKFLILCVLNMSKP 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01576 939 FunFam ATP-dependent Clp protease subunit 588 813 - -
Viun9g01576 939 SMART AAA_5 292 432 IPR003593 GO:0016887
Viun9g01576 939 SMART AAA_5 635 816 IPR003593 GO:0016887
Viun9g01576 939 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 252 529 IPR027417 -
Viun9g01576 939 Gene3D - 436 586 - -
Viun9g01576 939 Pfam ATPase family associated with various cellular activities (AAA) 297 413 IPR003959 GO:0005524|GO:0016887
Viun9g01576 939 Coils Coil 346 366 - -
Viun9g01576 939 SMART ClpB_D2_small_2 815 905 IPR019489 -
Viun9g01576 939 ProSiteProfiles UVR domain profile. 509 544 IPR001943 GO:0005515
Viun9g01576 939 Gene3D - 243 435 IPR027417 -
Viun9g01576 939 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 639 657 IPR001270 GO:0005524
Viun9g01576 939 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 684 702 IPR001270 GO:0005524
Viun9g01576 939 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 746 760 IPR001270 GO:0005524
Viun9g01576 939 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 713 731 IPR001270 GO:0005524
Viun9g01576 939 ProSiteProfiles Clp repeat (R) domain profile. 92 234 IPR004176 -
Viun9g01576 939 PANTHER ATP-DEPENDENT CLP PROTEASE 96 902 - -
Viun9g01576 939 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 584 902 IPR027417 -
Viun9g01576 939 Pfam C-terminal, D2-small domain, of ClpB protein 815 895 IPR019489 -
Viun9g01576 939 SUPERFAMILY Double Clp-N motif 93 234 IPR036628 -
Viun9g01576 939 Gene3D - 815 913 - -
Viun9g01576 939 ProSitePatterns Chaperonins clpA/B signature 2. 669 687 IPR028299 -
Viun9g01576 939 MobiDBLite consensus disorder prediction 13 32 - -
Viun9g01576 939 Gene3D - 588 813 IPR027417 -
Viun9g01576 939 Gene3D UVR domain 504 558 - -
Viun9g01576 939 Pfam Clp amino terminal domain, pathogenicity island component 182 233 IPR004176 -
Viun9g01576 939 Pfam Clp amino terminal domain, pathogenicity island component 106 158 IPR004176 -
Viun9g01576 939 Coils Coil 505 525 - -
Viun9g01576 939 FunFam Chaperone clpB 1, putative 243 435 - -
Viun9g01576 939 Pfam AAA lid domain 435 536 IPR041546 -
Viun9g01576 939 CDD RecA-like_ClpB_Hsp104-like 596 812 - -
Viun9g01576 939 ProSitePatterns Chaperonins clpA/B signature 1. 387 399 IPR018368 GO:0005524
Viun9g01576 939 CDD AAA 275 427 - -
Viun9g01576 939 Gene3D - 91 240 IPR036628 -
Viun9g01576 939 FunFam ATP-dependent Clp protease ATP-binding subunit ClpC 91 239 - -
Viun9g01576 939 Pfam AAA domain (Cdc48 subfamily) 635 808 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01576 Viun-Chr9 22998968 23005943 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01576 K03696 - gmx:100804035 1636.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g01576 9 22998968 23005943 Viun9g01576 9 22998968 23005943 ECH
Viun3g00682 3 4185978 4191573 Viun9g01576 9 22998968 23005943 PCT