Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00682 ATGGCTAGGGTTTTGGCTCAGTCTATTGGCATGCCTGGCCTACTTAGTGGGCAGAGGCAGGGGCAGCATAAGGCATCAGGAAAATCAAGAAGATCTGTCAAAATGATGGCTACCATACGAATGCCTGCATCAAGAATGTCGAGTTTCTCTGGACTGCGTACTTTGAACACTTTGGATCTTCTTTCCAGACCTCGACAAAATTTTCCTTCCAAGATGTTGACTTCAACTTCTTCCCGTCGTGAAAGGGCTAAAAGATGCGTACCTAAAGCCATGTTCGAGCGTTTCACGGAGAAAGCAATCAAAGTAATTATGCTAGCCCAGGAGGAAGCCAGACGGCTGGGACATAATTTTGTTGGAACTGAACAAATTTTATTGGGTCTTATTGGGGAAGGCACGGGCATTGCTGCTAAGGTGCTGAAGTCAATGGGAATTAACCTGAAGGATGCTCGTGTGGAAGTGGAAAAGATAATTGGAAGGGGTAGTGGATTTGTTGCTGTTGAGATTCCATTTACTCCCCGTGCAAAACGTGTTTTGGAACTCTCACTGGAGGAAGCTCGCCAACTTGGTCACAATTATATTGGATCTGAGCACTTGCTTCTTGGTCTTCTTCGAGAGGGTGAGGGTGTAGCAGCACGCGTTCTTGAAAATTTGGGTGCTGATCCAAATAATATTCGTGCTCAGGTTATTCGTATGGTGGGTGAGGGTGCTGACAGTGTTGGTGCTACTGTTGGCCCTGGAGGTGGTAATAACACTAAGATGCCAACTTTGGAGGAGTATGGCACCAATCTGACCAAGCTAGCCGAAGAGGGAAAATTGGATCCTGTCGTGGGTAGGCAGCCACAAATTGAGCGTGTCACTCAAATCTTGGGTCGCCGTACCAAAAATAATCCTTGTCTTATTGGAGAACCTGGGGTTGGGAAGACTGCTATTGCTGAAGGGCTTGCCCAGAGGATTGCAAATGGAGATGTTCCTGAAACCATAGAGGGAAAGAAGGTTATAACCCTTGATATGGGTCTACTGGTAGCTGGAACTAAATATCGTGGAGAATTTGAGGAGAGATTGAAAAAACTAATGGAGGAAATCAAACAAAGTGATGAGATAATACTTTTTATTGATGAAGTACACACTCTAATTGGAGCTGGAGCAGCTGAGGGGGCAATTGATGCTGCAAACATACTAAAACCTGCTCTTGCTAGAGGTGAACTACAGTGTATTGGAGCCACAACGCTGGATGAATATAGGAAGCACATTGAAAAGGACCCAGCACTGGAGAGGCGATTCCAGCCAGTTAAGGTGCCAGAGCCTACGGTTGATGAAACCATACAGATACTGAAAGGGCTTAGGGAGCGGTATGAGATTCATCACAAGCTCCAATATACAGATGAAGCACTTGAAGCTGCTGCCCAGCTGTCACATCAGTATATTAGTGATCGATTTTTGCCCGACAAAGCTATAGATTTAATTGATGAAGCAGGTTCCCGTGTGCGGCTTCAACATGCACAGTTACCGGAAGAAGCAAGAGAGCTTGACAAGGAGCTCAGACAGATTGTGAAAGAAAAAGATGAAGCCGTTCGCAATCAAGACTTTGAAAAGGCTGGAGAGCTACGAGATAAAGAAATGGATCTGAAGACCCAGATATCCTCACTTATAGAAAAAGGCAAGGAGATGAGCAAGGCAGAAAGTGAGGCAGGAGATGGAGGTCCCATGGTGACTGAAGTTGACATACAACATATTGTCTCCTCCTGGACTGGTATTCCGGTAGAGAAAGTCTCAACTGACGAATCTGATCGCCTCCTAAAGATGGAAGAGACTTTACACACACGAGTCATAGGTCAGGATGAAGCAGTAAAAGCAATTAGCCGAGCCATCCGCCGAGCTAGGGTGGGATTGAAGAATCCTAATCGACCAATTGCCAGCTTCATCTTTTCCGGTCCAACTGGTGTGGGGAAGTCTGAATTAGCCAAAGCATTGGCTGCATACTATTTTGGTTCTGAAGAAGCCATGATTAGGCTTGACATGAGTGAATTTATGGAAAGACACACAGTCTCTAAACTCATTGGTTCACCCCCTGGATATGTTGGTTACACCGAAGGTGGTCAACTGACTGAGGCAGTTCGGCGTCGTCCCTACACTGTTGTACTATTTGATGAGATTGAGAAAGCACATCCTGATGTATTCAACATGATGCTTCAGATTCTGGAAGATGGAAGACTAACCGACAGCAAAGGGAGAACTGTGGACTTCAAGAACACTCTTCTAATAATGACATCAAATGTTGGAAGCAGTGTGATTGAGAAAGGAGGACGTAAAATGGGATTTGACCTCGATTACGATGAGAAGGATAGCAGTTACAATCGAATCAAGAGCTTGGTGACTGAGGAGCTGAAACAATACTTTAGGCCAGAGTTCTTGAATAGGTTGGACGAAATGATTGTTTTCAGGCAACTCACAAAGCTGGAGGTAAAGGAGATAGCTGATATAATGTTGAAGGAGGTGTTTGAAAGACTGAAGGCCAAAGAGATTGATCTCTCAGTGACAGAAAGATTTAGGGAGAGGGTGGTTGAGGAAGGATATAATCCTAGTTATGGGGCTAGGCCTCTAAGAAGAGCCATCATGCGACTTTTGGAGGACAGTATGGCCGAGAAGATGCTTGCTAGAGAGATTAAAGAGGGTGACTCTGTTATAGTGGATGCTGATTCCGATGGTAATGTGATTGTGCTCAACGGAAGTAGTGGTGCTCCGGAGTCACTAACAGAAGCTCTTCCTGTGTAA 2772 0.4517 MARVLAQSIGMPGLLSGQRQGQHKASGKSRRSVKMMATIRMPASRMSSFSGLRTLNTLDLLSRPRQNFPSKMLTSTSSRRERAKRCVPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPNNIRAQVIRMVGEGADSVGATVGPGGGNNTKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLQYTDEALEAAAQLSHQYISDRFLPDKAIDLIDEAGSRVRLQHAQLPEEARELDKELRQIVKEKDEAVRNQDFEKAGELRDKEMDLKTQISSLIEKGKEMSKAESEAGDGGPMVTEVDIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHTRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRKMGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFERLKAKEIDLSVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDADSDGNVIVLNGSSGAPESLTEALPV 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00682 923 ProSitePatterns Chaperonins clpA/B signature 1. 388 400 IPR018368 GO:0005524
Viun3g00682 923 Pfam Clp amino terminal domain, pathogenicity island component 182 233 IPR004176 -
Viun3g00682 923 Pfam Clp amino terminal domain, pathogenicity island component 106 158 IPR004176 -
Viun3g00682 923 Coils Coil 506 526 - -
Viun3g00682 923 Gene3D UVR domain 502 566 - -
Viun3g00682 923 ProSiteProfiles Clp repeat (R) domain profile. 92 234 IPR004176 -
Viun3g00682 923 FunFam ATP-dependent Clp protease ATP-binding subunit ClpC 91 239 - -
Viun3g00682 923 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 253 530 IPR027417 -
Viun3g00682 923 MobiDBLite consensus disorder prediction 13 33 - -
Viun3g00682 923 Pfam AAA lid domain 436 538 IPR041546 -
Viun3g00682 923 Gene3D - 91 238 IPR036628 -
Viun3g00682 923 Gene3D - 816 913 - -
Viun3g00682 923 Pfam C-terminal, D2-small domain, of ClpB protein 816 896 IPR019489 -
Viun3g00682 923 SUPERFAMILY Double Clp-N motif 93 233 IPR036628 -
Viun3g00682 923 ProSitePatterns Chaperonins clpA/B signature 2. 670 688 IPR028299 -
Viun3g00682 923 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 585 902 IPR027417 -
Viun3g00682 923 Gene3D - 247 436 IPR027417 -
Viun3g00682 923 CDD RecA-like_ClpB_Hsp104-like 597 813 - -
Viun3g00682 923 CDD AAA 276 428 - -
Viun3g00682 923 Pfam AAA domain (Cdc48 subfamily) 635 809 IPR003959 GO:0005524|GO:0016887
Viun3g00682 923 Gene3D - 588 814 IPR027417 -
Viun3g00682 923 Coils Coil 347 367 - -
Viun3g00682 923 SMART AAA_5 636 817 IPR003593 GO:0016887
Viun3g00682 923 SMART AAA_5 293 433 IPR003593 GO:0016887
Viun3g00682 923 FunFam Chaperone clpB 1, putative 246 436 - -
Viun3g00682 923 Gene3D - 438 582 - -
Viun3g00682 923 PANTHER ATP-DEPENDENT CLP PROTEASE 96 903 - -
Viun3g00682 923 FunFam ATP-dependent Clp protease subunit 589 814 - -
Viun3g00682 923 FunFam ATP-dependent chaperone ClpB 816 909 - -
Viun3g00682 923 SMART ClpB_D2_small_2 816 906 IPR019489 -
Viun3g00682 923 ProSiteProfiles UVR domain profile. 510 545 IPR001943 GO:0005515
Viun3g00682 923 FunFam ATP-dependent Clp protease ATP-binding subunit 437 522 - -
Viun3g00682 923 Pfam ATPase family associated with various cellular activities (AAA) 298 414 IPR003959 GO:0005524|GO:0016887
Viun3g00682 923 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 714 732 IPR001270 GO:0005524
Viun3g00682 923 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 640 658 IPR001270 GO:0005524
Viun3g00682 923 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 747 761 IPR001270 GO:0005524
Viun3g00682 923 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 685 703 IPR001270 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00682 Viun-Chr3 4185978 4191573 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00682 K03696 - gmx:100814891 1677.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00682 3 4185978 4191573 Viun9g01576 9 22998968 23005943 PCT